Packages
695 packages on Bioconductor tagged ExperimentData or DataRepresentation or DNAMethylation, most distinct IPs first
ExperimentData, DataRepresentation and DNAMethylation in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| S4Vectors Foundation of vector-like and list-like containers in BioconductorHervé Pagès | Hervé Pagès | software | 16 Sep 2026 | 74,754 | 7 |
| IRanges Foundation of integer range manipulation in BioconductorHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 68,817 | 8 |
| XVector Foundation of external vector representation and manipulation in BioconductorHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 63,837 | 10 |
| SparseArray High-performance sparse data representation and manipulation in RHervé Pagès | Hervé Pagès | software | 22 Sep 2026 | 59,629 | 19 |
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| DelayedArray A unified framework for working transparently with on-disk and in-memory array-like datasetsHervé Pagès | Hervé Pagès | software | 26 May 2026 | 57,500 | 20 |
| GenomicRanges Representation and manipulation of genomic intervalsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 56,974 | 10 |
| S4Arrays Foundation of array-like containers in BioconductorHervé Pagès | Hervé Pagès | software | 22 Sep 2026 | 53,675 | 14 |
| GenomeInfoDb Utilities for manipulating chromosome names, including modifying them to follow a particular naming styleHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 37,356 | 20 |
| ggtree an R package for visualization of tree and annotation dataGuangchuang Yu | Guangchuang Yu | software | 29 Oct 2026 | 34,372 | 79 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| treeio Base Classes and Functions for Phylogenetic Tree Input and OutputGuangchuang Yu | Guangchuang Yu | software | 30 Apr 2026 | 31,966 | 39 |
| SingleCellExperiment S4 Classes for Single Cell DataDavide Risso | Davide Risso | software | 28 Apr 2026 | 24,483 | 25 |
| beachmat Compiling Bioconductor to Handle Each Matrix TypeAaron Lun | Aaron Lun | software | 28 Apr 2026 | 22,121 | 23 |
| sparseMatrixStats Summary Statistics for Rows and Columns of Sparse MatricesConstantin Ahlmann-Eltze | Constantin Ahlmann-Eltze | software | 28 Apr 2026 | 21,500 | 11 |
| HDF5Array HDF5 datasets as array-like objects in RHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 20,537 | 28 |
| DelayedMatrixStats Functions that Apply to Rows and Columns of 'DelayedMatrix' ObjectsPeter Hickey | Peter Hickey | software | 28 Apr 2026 | 19,969 | 23 |
| assorthead Assorted Header-Only C++ LibrariesAaron Lun | Aaron Lun | software | 8 Oct 2026 | 19,436 | 0 |
| ScaledMatrix Creating a DelayedMatrix of Scaled and Centered ValuesAaron Lun | Aaron Lun | software | 28 Apr 2026 | 17,725 | 21 |
| h5mread A fast HDF5 readerHervé Pagès | Hervé Pagès | software | 23 Aug 2026 | 15,167 | 26 |
| BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 14,375 | 57 |
| scater Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan | Alan O'Callaghan | software | 2 Jul 2026 | 12,635 | 78 |
| SpatialExperiment S4 Class for Spatially Resolved -omics DataDario Righelli | Dario Righelli | software | 28 Apr 2026 | 10,718 | 64 |
| MultiAssayExperiment Software for the integration of multi-omics experiments in BioconductorMarcel Ramos | Marcel Ramos | software | 28 Apr 2026 | 9,523 | 45 |
| TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva | Tiago Chedraoui Silva | software | 28 Apr 2026 | 6,750 | 103 |
| alabaster.base Save Bioconductor Objects to FileAaron Lun | Aaron Lun | software | 2 Jul 2026 | 5,783 | 23 |
| TCGAbiolinksGUI.data Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva | Tiago Chedraoui Silva | experiment | 5 May 2026 | 5,758 | 0 |
| celldex Index of Reference Cell Type DatasetsAaron Lun | Aaron Lun | experiment | 5 May 2026 | 5,717 | 95 |
| ResidualMatrix Creating a DelayedMatrix of Regression ResidualsAaron Lun | Aaron Lun | software | 28 Apr 2026 | 5,559 | 21 |
| alabaster.matrix Load and Save Artifacts from FileAaron Lun | Aaron Lun | software | 28 Apr 2026 | 5,527 | 38 |