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Topic: SingleCell or MassSpectrometry

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Release: Release 3.2 (2015)

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58 packages on Bioconductor tagged SingleCell or MassSpectrometry, most distinct IPs first

SingleCell and MassSpectrometry in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
ProtGenerics
Generic infrastructure for Bioconductor mass spectrometry packagesLaurent Gatto		Laurent Gattosoftware28 Apr 202613,0181
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
mzID
An mzIdentML parser for RLaurent Gatto		Laurent Gattosoftware28 Apr 20264,53211
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 20262,96997
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
pRoloc
A unifying bioinformatics framework for spatial proteomicsLisa Breckels		Lisa Breckelssoftware28 Apr 20261,689230
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi		Meena Choisoftware28 Apr 20261,586100
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
rpx
R Interface to the ProteomeXchange RepositoryLaurent Gatto		Laurent Gattosoftware29 Sep 20261,32946
rols
An R interface to the Ontology Lookup ServiceSehyun Oh		Sehyun Ohsoftware12 Oct 20261,30422
MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics IdentificationsVlad Petyuk		Vlad Petyuksoftware28 Apr 20261,236169
TPP
Analyze thermal proteome profiling (TPP) experimentsDorothee Childs		Dorothee Childssoftware14 Sep 20261,22186
qcmetrics
A Framework for Quality ControlLaurent Gatto		Laurent Gattosoftware28 Apr 20261,19020
isobar
Analysis and quantitation of isobarically tagged MSMS proteomics dataFlorian P Breitwieser		Florian P Breitwiesersoftware28 Apr 20261,14378
RMassBank
Workflow to process tandem MS files and build MassBank recordsRMassBank at Eawag		RMassBank at Eawagsoftware28 Apr 20261,116175
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
TRONCO
TRONCO, an R package for TRanslational ONCOlogyLuca De Sano		Luca De Sanosoftware28 Apr 20261,02547
metaMS
MS-based metabolomics annotation pipelineYann Guitton		Yann Guittonsoftware28 Apr 20261,016160
BRAIN
Baffling Recursive Algorithm for Isotope distributioN calculationsPiotr Dittwald		Piotr Dittwaldsoftware28 Apr 20261,01419
apComplex
Estimate protein complex membership using AP-MS protein dataDenise Scholtens		Denise Scholtenssoftware28 Apr 20261,00948
DAPAR
Tools for the Differential Analysis of Proteins Abundance with RSamuel Wieczorek		Samuel Wieczoreksoftware28 Apr 2026985136
gaga
GaGa hierarchical model for high-throughput data analysisDavid Rossell		David Rossellsoftware28 Apr 202695917
msmsTests
LC-MS/MS Differential Expression TestsJosep Gregori i Font		Josep Gregori i Fontsoftware28 Apr 2026931145
immunoClust
immunoClust - Automated Pipeline for Population Detection in Flow CytometryTill Soerensen		Till Soerensensoftware28 Apr 202691824