ProtGenerics
Bioc currentGeneric infrastructure for Bioconductor mass spectrometry packages
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
S4 generic functions and classes needed by Bioconductor proteomics packages.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
3 0 exported
Complexity
2 avg / 2 max
Call network
3 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,080
Files
18
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
1
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.08
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-04-16
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 9includes a package overview page
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 25%
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 0%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/rformassspectrometry/protgenerics on 2026-10-18.
Topics
Depended on by (35)
Show 30 of 35 dependentsHide 30 dependents
Bioconductor (35)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ProtGenerics")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.