TPP
Bioc currentAnalyze thermal proteome profiling (TPP) experiments
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
192 45 exported
Complexity
4.1 avg / 23 max
Call network
192 nodes / 290 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
19,822
Files
339
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
45
Internal functions
147
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.37
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
12
Dep constraint coverage
3.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-07-21
Latest release
2026-09-12
Avg cadence
182 days
Cold removal rate
100%
Dep drift
27
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 56includes a package overview page
- Examples that run
- 100%35 run in a plain check
- Exported functions with examples
- 85%
- Documented parameters
- 96%
- Return-value docs
- 100%
- Help pages citing references
- 21%
- Fixed package dependency checks by replacing methods::is() with inherits() and removing the unused mefa import.
From NEWS in the release
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| exampleSet | – | – | – |
| hdacCCR_config | data.frame | 2 × 11 | No other package |
| hdacCCR_data | list | 2 elements | No other package |
| hdacTR_config | data.frame | 4 × 14 | No other package |
| hdacTR_data | list | 4 elements | No other package |
| panobinostat_2DTPP_config | data.frame | 12 × 15 | No other package |
| panobinostat_2DTPP_data | list | 6 elements | No other package |
| refBins | vector | 105 elements | No other package |
| refFilteredOut | vector | 5,732 elements | No other package |
| refIDs | vector | 5,732 elements | No other package |
| refMinSl | vector | 5,732 elements | No other package |
| refMpDiff | vector | 5,732 elements | No other package |
| refMpT | vector | 5,732 elements | No other package |
| refMpV | vector | 5,732 elements | No other package |
| refP | vector | 5,732 elements | No other package |
| refPlV | vector | 5,732 elements | No other package |
| refR2T | vector | 5,732 elements | No other package |
| refR2V | vector | 5,732 elements | No other package |
| refSlT | vector | 5,732 elements | No other package |
| refSlV | vector | 5,732 elements | No other package |
| ref_x | vector | 105 elements | No other package |
| resultTable | data.frame | 510 × 91 | No other package |
| tppRefData | list | 5 elements | No other package |
Topics
Suggested by (1)
People
- Dorothee Childs maintainer author
- Carola Doce author
- Holger Franken author
- Wolfgang Huber author
- Nils Kurzawa author
- Mikhail Savitski author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TPP")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.