Packages
368 packages on Bioconductor tagged Homo_sapiens or DNAMethylation, most distinct IPs first
Homo_sapiens and DNAMethylation in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 29,813 | 42 |
| TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva | Tiago Chedraoui Silva | software | 28 Apr 2026 | 6,750 | 103 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| bumphunter Bump HunterTamilselvi Guharaj | Tamilselvi Guharaj | software | 28 Apr 2026 | 4,268 | 83 |
| hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,227 | 43 |
| minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 4,041 | 143 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 3,389 | 81 |
| IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 2,852 | 144 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |
| methylumi Handle Illumina methylation dataSean Davis | Sean Davis | software | 16 Aug 2026 | 2,825 | 158 |
| bsseq Analyze, manage and store whole-genome methylation dataKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 2,718 | 89 |
| lumi BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang | Lei Huang | software | 28 Apr 2026 | 2,454 | 165 |
| hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,996 | 43 |
| missMethyl Analysing Illumina HumanMethylation BeadChip DataBelinda Phipson | Belinda Phipson | software | 12 May 2026 | 1,987 | 169 |
| DMRcate Methylation array and sequencing spatial analysis methodsTim Peters | Tim Peters | software | 3 May 2026 | 1,838 | 224 |
| methylKit DNA methylation analysis from high-throughput bisulfite sequencing resultsAltuna Akalin | Altuna Akalin | software | 28 Apr 2026 | 1,833 | 99 |
| EpiDISH Epigenetic Dissection of Intra-Sample-HeterogeneityShijie C. Zheng | Shijie C. Zheng | software | 28 Apr 2026 | 1,793 | 63 |
| IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 1,773 | 144 |
| wateRmelon Illumina DNA methylation array normalization and metricsLeo C Schalkwyk | Leo C Schalkwyk | software | 28 Apr 2026 | 1,720 | 172 |
| DSS Dispersion shrinkage for sequencing dataHao Wu | Hao Wu | software | 28 Apr 2026 | 1,702 | 91 |
| IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Annotation for Illumina's EPIC methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 1,677 | 144 |
| sesame SEnsible Step-wise Analysis of DNA MEthylation BeadChipsWanding Zhou | Wanding Zhou | software | 30 Jun 2026 | 1,658 | 112 |
| ChAMP Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPICYuan Tian | Yuan Tian | software | 28 Apr 2026 | 1,643 | 266 |
| hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,618 | 42 |
| hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,605 | 43 |
| FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr. | Tim Triche, Jr. | annotation | no date on record | 1,483 | 77 |
| TOAST Tools for the analysis of heterogeneous tissuesZiyi Li | Ziyi Li | software | 28 Apr 2026 | 1,454 | 102 |