sesame
Bioc currentSEnsible Step-wise Analysis of DNA MEthylation BeadChips
Release Lineage
Entered 3.8 · Oct 31, 2018
Current · Requires R 4.6
Description
Tools For analyzing Illumina Infinium DNA methylation arrays. SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features accurate detection calling, intelligent inference of ethnicity, sex and advanced quality control routines.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
190 100 exported
Complexity
2.9 avg / 16 max
Call network
190 nodes / 235 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
11,639
Files
174
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
101
Internal functions
90
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
18.2%
Unsafe pattern score
0
Dep constraint coverage
13.6%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
16
First release
2018-10-30
Latest release
2026-06-27
Avg cadence
180 days
Cold removal rate
99.2%
Dep drift
30
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 94%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 1%
Topics
Depended on by (8)
Bioconductor (8)
People
- Wanding Zhou author maintainer fnd
- Bret Barnes contributor
- Wubin Ding contributor
- David Goldberg contributor
- Ethan Moyer contributor
- Hui Shen author fnd
- Timothy Triche contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("sesame")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.