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Topic: Spatial or MicroarrayData or Infrastructure

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Release: Release 3.15 (2022)

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650 packages on Bioconductor tagged Spatial or MicroarrayData or Infrastructure, most distinct IPs first

Spatial, MicroarrayData and Infrastructure in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
BiocVersion
Set the appropriate version of Bioconductor packagesBioconductor Package Maintainer		Bioconductor Package Maintainersoftware30 Oct 202578,5530
S4Vectors
Foundation of vector-like and list-like containers in BioconductorHervé Pagès		Hervé Pagèssoftware16 Sep 202674,7547
BiocGenerics
S4 generic functions used in BioconductorHervé Pagès		Hervé Pagèssoftware14 May 202674,5745
IRanges
Foundation of integer range manipulation in BioconductorHervé Pagès		Hervé Pagèssoftware28 Apr 202668,8178
Biobase
Biobase: Base functions for BioconductorBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202664,5556
XVector
Foundation of external vector representation and manipulation in BioconductorHervé Pagès		Hervé Pagèssoftware28 Apr 202663,83710
BiocParallel
Bioconductor facilities for parallel evaluationJiefei Wang		Jiefei Wangsoftware29 Apr 202659,78012
Biostrings
Efficient manipulation of biological stringsHervé Pagès		Hervé Pagèssoftware2 Sep 202658,96214
DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasetsHervé Pagès		Hervé Pagèssoftware26 May 202657,50020
GenomicRanges
Representation and manipulation of genomic intervalsHervé Pagès		Hervé Pagèssoftware28 Apr 202656,97410
SummarizedExperiment
A container (S4 class) for matrix-like assaysHervé Pagès		Hervé Pagèssoftware28 Apr 202653,48424
MatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like ObjectsPeter Hickey		Peter Hickeysoftware28 Apr 202652,7102
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming styleHervé Pagès		Hervé Pagèssoftware28 Apr 202637,35620
ggtree
an R package for visualization of tree and annotation dataGuangchuang Yu		Guangchuang Yusoftware29 Oct 202634,37279
treeio
Base Classes and Functions for Phylogenetic Tree Input and OutputGuangchuang Yu		Guangchuang Yusoftware30 Apr 202631,96639
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
BiocFileCache
Manage Files Across SessionsLori Shepherd		Lori Shepherdsoftware28 Apr 202629,41641
Rhdf5lib
hdf5 library as an R packageHugo Gruson		Hugo Grusonsoftware28 Apr 202628,6545
Rhtslib
HTSlib high-throughput sequencing library as an R packageHervé Pagès		Hervé Pagèssoftware28 Apr 202628,0831
rhdf5
R Interface to HDF5Hugo Gruson		Hugo Grusonsoftware14 Sep 202627,6208
GenomicAlignments
Representation and manipulation of short genomic alignmentsHervé Pagès		Hervé Pagèssoftware28 Apr 202627,00641
rhdf5filters
HDF5 Compression FiltersHugo Gruson		Hugo Grusonsoftware28 Jul 202626,2006
rtracklayer
R interface to genome annotation files and the UCSC genome browserMichael Lawrence		Michael Lawrencesoftware28 Apr 202626,11956
SingleCellExperiment
S4 Classes for Single Cell DataDavide Risso		Davide Rissosoftware28 Apr 202624,48325
BiocIO
Standard Input and Output for Bioconductor PackagesMarcel Ramos		Marcel Ramossoftware28 Apr 202622,8999
beachmat
Compiling Bioconductor to Handle Each Matrix TypeAaron Lun		Aaron Lunsoftware28 Apr 202622,12123
sparseMatrixStats
Summary Statistics for Rows and Columns of Sparse MatricesConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware28 Apr 202621,50011
zlibbioc
An R packaged zlib-1.2.5		no date on record21,012
HDF5Array
HDF5 datasets as array-like objects in RHervé Pagès		Hervé Pagèssoftware28 Apr 202620,53728