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Topic: ExperimentData or Mus_musculus or Annotation

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Release: Release 2.7 (2010)

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177 packages on Bioconductor tagged ExperimentData or Mus_musculus or Annotation, most distinct IPs first

ExperimentData, Mus_musculus and Annotation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
GenomicRanges
Representation and manipulation of genomic intervalsHervé Pagès		Hervé Pagèssoftware28 Apr 202656,97410
AnnotationDbi
Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202647,94141
GOSemSim
GO-terms Semantic Similarity MeasuresGuangchuang Yu		Guangchuang Yusoftware30 Jun 202627,49548
rtracklayer
R interface to genome annotation files and the UCSC genome browserMichael Lawrence		Michael Lawrencesoftware28 Apr 202626,11956
biomaRt
Interface to BioMart databases (i.e. Ensembl)Hugo Gruson		Hugo Grusonsoftware28 Apr 202624,57161
annotate
Annotation for microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202622,55744
GenomicFeatures
Query the gene models of a given organism/assemblyH. Pagès		H. Pagèssoftware28 Apr 202619,21874
BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès		Hervé Pagèssoftware28 Apr 202614,37557
org.Mm.eg.db
Genome wide annotation for MouseBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record13,52042
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
Category
Category AnalysisBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,35557
TxDb.Mmusculus.UCSC.mm10.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,19275
BSgenome.Mmusculus.UCSC.mm10
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,15258
ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval dataJianhong Ou		Jianhong Ousoftware10 Aug 20261,898125
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,2520
pdInfoBuilder
Platform Design Information Package BuilderBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20261,17553
annaffy
Annotation tools for Affymetrix biological metadataColin A. Smith		Colin A. Smithsoftware28 Apr 20261,17344
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
ecolitk
Meta-data and tools for E. coliLaurent Gautier		Laurent Gautiersoftware28 Apr 20261,0877
goProfiles
goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez		Alex Sanchezsoftware28 Apr 20261,06547
mouse4302.db
Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,05843
EnsDb.Mmusculus.v79
Ensembl based annotation packageJohannes Rainer		Johannes Rainerannotationno date on record95581
annotationTools
Annotate microarrays and perform cross-species gene expression analyses using flat file databasesAlexandre Kuhn		Alexandre Kuhnsoftware28 Apr 20269447
mouse4302cdf
mouse4302cdfBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record94442
TxDb.Mmusculus.UCSC.mm9.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record89375
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202681611
xmapbridge
Export plotting files to the xmapBridge for visualisation in X:MapChris Wirth		Chris Wirthsoftware28 Apr 20267761
miRNApath
miRNApath: Pathway Enrichment for miRNA Expression DataJames M. Ward		James M. Wardsoftware28 Apr 20267341