annaffy
Bioc currentAnnotation tools for Affymetrix biological metadata
Release Lineage
Entered 1.4 · May 17, 2004
Current · Requires R 4.6
Description
Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
32 2 exported
Complexity
4.2 avg / 14 max
Call network
32 nodes / 35 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,677
Files
61
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
11
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.5.0
System requirements
–
C++ standard
–
License
LGPL
License flags
not SPDX, not OSI
History
Versions
45
First release
2004-08-23
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
11
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 88%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (7)
Bioconductor (6)
CRAN (1)
People
Colin A. Smith
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("annaffy")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.