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Topic: VariantAnnotation or Bayesian or ExperimentData

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Release: Release 2.14 (2014)

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229 packages on Bioconductor tagged VariantAnnotation or Bayesian or ExperimentData, most distinct IPs first

VariantAnnotation, Bayesian and ExperimentData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202644,6566
DESeq2
Differential gene expression analysis based on the negative binomial distributionMichael Love		Michael Lovesoftware28 Apr 202631,84554
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202631,06510
VariantAnnotation
Annotation of Genetic VariantsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20269,77176
pcaMethods
A collection of PCA methodsHenning Redestig		Henning Redestigsoftware28 Apr 20267,21410
ALL
A data packageRobert Gentleman		Robert Gentlemanexperiment5 May 20264,1047
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,7228
geneLenDataBase
Lengths of mRNA transcripts for a number of genomesFederico Marini		Federico Mariniexperiment5 May 20262,26498
bcellViper
Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez		Mariano Javier Alvarezexperiment5 May 20262,0557
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,370108
baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,16820
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,1620
affydata
Affymetrix Data for Demonstration PurposeRobert D Shear		Robert D Shearexperiment5 May 20261,16112
golubEsets
exprSets for golub leukemia dataVince Carey		Vince Careyexperiment5 May 20261,1077
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès		Hervé Pagèsexperiment5 May 20261,0760
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,07030
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,03355
faahKO
Saghatelian et al. (2004) FAAH knockout LC/MS dataSteffen Neumann		Steffen Neumannexperiment5 May 2026992144
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202696755
pasillaBamSubset
Subset of BAM files from "Pasilla" experimentHervé Pagès		Hervé Pagèsexperiment5 May 20269600
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20269497
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202690778
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202690511
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 202682250
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202680594
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202679711
ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)Ying Shen		Ying Shensoftware28 Apr 202677093
flowWorkspaceData
A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages.Mike Jiang		Mike Jiangexperiment5 May 20267370
humanStemCell
Human Stem Cells time course experimentR. Gentleman		R. Gentlemanexperiment5 May 202673744
minfiData
Example data for the Illumina Methylation 450k arrayKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 2026731146