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Topic: SingleCell or Proteomics or ImmunoOncology

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Release: Release 2.10 (2012)

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78 packages on Bioconductor tagged SingleCell or Proteomics or ImmunoOncology, most distinct IPs first

SingleCell, Proteomics and ImmunoOncology in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
phyloseq
Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20268,37966
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesErik Wright		Erik Wrightsoftware30 Jul 20264,88216
flowCore
flowCore: Basic structures for flow cytometry dataMike Jiang		Mike Jiangsoftware28 Apr 20264,65121
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
DEXSeq
Inference of differential exon usage in RNA-SeqHugo Gruson		Hugo Grusonsoftware28 Apr 20262,837107
flowWorkspace
Infrastructure for representing and interacting with gated and ungated cytometry data sets.Greg Finak		Greg Finaksoftware28 Apr 20262,80461
EDASeq
Exploratory Data Analysis and Normalization for RNA-SeqDavide Risso		Davide Rissosoftware28 Apr 20262,602111
ncdfFlow
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.Mike Jiang		Mike Jiangsoftware28 Apr 20262,52522
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
flowViz
Visualization for flow cytometryMike Jiang		Mike Jiangsoftware26 Aug 20262,37235
flowClust
Clustering for Flow CytometryGreg Finak		Greg Finaksoftware28 Apr 20262,26624
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
flowStats
Statistical methods for the analysis of flow cytometry dataGreg Finak		Greg Finaksoftware28 Apr 20261,764107
QuasR
Quantify and Annotate Short Reads in RMichael Stadler		Michael Stadlersoftware28 Apr 20261,551114
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
attract
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor LandscapeSamuel Zimmerman		Samuel Zimmermansoftware28 Apr 20261,23769
flowMeans
Non-parametric Flow Cytometry Data GatingNima Aghaeepour		Nima Aghaeepoursoftware28 Apr 20261,14745
isobar
Analysis and quantitation of isobarically tagged MSMS proteomics dataFlorian P Breitwieser		Florian P Breitwiesersoftware28 Apr 20261,14378
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
cqn
Conditional quantile normalizationKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20261,08716
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479