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Topic: VariantAnnotation or Bayesian or ExpressionData

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25 packages on Bioconductor tagged VariantAnnotation or Bayesian or ExpressionData, most distinct IPs first

VariantAnnotation, Bayesian and ExpressionData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,208121
scde
Single Cell Differential ExpressionEvan Biederstedt		Evan Biederstedtsoftware28 Apr 20261,03350
scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributionsKeegan Korthauer		Keegan Korthauersoftware28 Apr 2026845117
StructuralVariantAnnotation
Variant annotations for structural variantsDaniel Cameron		Daniel Cameronsoftware28 Apr 202675890
sccomp
Differential Composition and Variability Analysis for Single-Cell DataStefano Mangiola		Stefano Mangiolasoftware28 Apr 202671576
seqCAT
High Throughput Sequencing Cell Authentication ToolkitErik Fasterius		Erik Fasteriussoftware28 Apr 202668099
svaRetro
Retrotransposed transcript detection from structural variantsRuining Dong		Ruining Dongsoftware28 Apr 202661991
SigsPack
Mutational Signature Estimation for Single SamplesFranziska Schumann		Franziska Schumannsoftware28 Apr 202661680
svaNUMT
NUMT detection from structural variant callsRuining Dong		Ruining Dongsoftware28 Apr 202658191
scMET
Bayesian modelling of cell-to-cell DNA methylation heterogeneityAndreas C. Kapourani		Andreas C. Kapouranisoftware28 Apr 2026564107
spatialLIBD
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics dataLeonardo Collado-Torres		Leonardo Collado-Torresexperiment5 May 2026554190
scDDboost
A compositional model to assess expression changes from single-cell rna-seq dataXiuyu Ma		Xiuyu Masoftware28 Apr 202652182
SNPediaR
Query data from SNPediaDavid Montaner		David Montanersoftware29 Apr 20264774
STexampleData
Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor formatLukas M. Weber		Lukas M. Weberexperiment16 Jul 202643580
SanityR
R/Bioconductor interface to the Sanity model gene expression analysisTeo Sakel		Teo Sakelsoftware28 Apr 202637540
StatescopeR
StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profilesMischa Steketee		Mischa Steketeesoftware14 Oct 202636477
signatureSearchData
Datasets for signatureSearch packageBrendan Gongol		Brendan Gongolexperiment5 May 202627077
scpdata
Single-Cell Proteomics Data PackageChristophe Vanderaa		Christophe Vanderaaexperiment5 May 2026247119
SFEData
Example SpatialFeatureExperiment datasetsLambda Moses		Lambda Mosesexperiment5 May 202623164
scMultiome
Collection of Public Single-Cell Multiome (scATAC + scRNAseq) DatasetsXiaosai Yao		Xiaosai Yaoexperiment5 May 2026200101
smokingMouse
Provides access to smokingMouse project dataDaianna Gonzalez-Padilla		Daianna Gonzalez-Padillaexperiment5 May 20261850
spatialDmelxsim
Spatial allelic expression counts for fly cross embryoMichael Love		Michael Loveexperiment5 May 202618075
scATAC.Explorer
A Collection of Single-cell ATAC Sequencing Datasets and Corresponding MetadataJonathan Wang		Jonathan Wangexperiment5 May 202617874
sampleClassifierData
Pre-processed data for use with the sampleClassifier packageKhadija El Amrani		Khadija El Amraniexperiment5 May 202617625
spqnData
Data for the spqn packageYi Wang		Yi Wangexperiment5 May 202617425