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Example SpatialFeatureExperiment datasets

v1.14.0 · experiment · Artistic-2.0
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Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

Code

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Topics

ExperimentData › PackageTypeData › ExperimentHub
ExperimentData › AssayDomainData › ExpressionData
ExperimentData › OrganismData › Mus_musculus_Data
ExperimentData › OrganismData › Homo_sapiens_Data
ExperimentData › TechnologyData › SequencingData › SpatialData
ExperimentData › SpecimenSource › Tissue
ExperimentData › TechnologyData › SequencingData › SingleCellData

Depended on by (7)

Bioconductor (7)

alabaster.sfe concordexR jazzPanda SpatialFeatureExperiment Voyager xenLite OSTA

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