scMultiome
Bioc currentCollection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
33 15 exported
Complexity
3.9 avg / 42 max
Call network
33 nodes / 19 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,412
Files
68
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
16
Internal functions
18
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.20
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
3
Dep constraint coverage
7.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
CC BY-SA 4.0
License flags
not SPDX, not OSI
History
Versions
–
First release
–
Latest release
–
Avg cadence
–
Cold removal rate
–
Dep drift
–
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 17 (6 internal)includes a package overview page
- Examples that run
- 100%11 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 72%
- Return-value docs
- 100%
- Help pages citing references
- 41%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_19.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
Topics
Suggested by (2)
People
- Xiaosai Yao maintainer author
- Aleksander Chlebowski author
- Aaron Lun author
- Tomasz Włodarczyk author
- Shiqi Xie contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("scMultiome")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.