scpdata
Bioc currentSingle-Cell Proteomics Data Package
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
4 2 exported
Complexity
1 avg / 1 max
Call network
4 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,177
Files
117
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
2
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-05-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 3%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- References docs
- 94%
Topics
Depended on by (1)
Bioconductor (1)
People
- Christophe Vanderaa author maintainer
- Enes Ayar dtc
- Laurent Gatto author
- Samuel Grégoire dtc
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("scpdata")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.