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Topic: RNASeq or QualityControl

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113 packages on Bioconductor tagged RNASeq or QualityControl, most distinct IPs first

RNASeq and QualityControl in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
scuttle
Legacy Utilities for Single-Cell RNA-Seq AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202614,23639
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
ShortRead
FASTQ input and manipulationBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20268,12653
scDblFinder
scDblFinderPierre-Luc Germain		Pierre-Luc Germainsoftware14 Oct 20266,116121
slingshot
Tools for ordering single-cell sequencingKelly Street		Kelly Streetsoftware28 Apr 20264,68438
scrapper
Bindings to C++ Libraries for Single-Cell AnalysisAaron Lun		Aaron Lunsoftware19 May 20263,11930
systemPipeR
systemPipeR: A Multipurpose Workflow Management System for Reproducible Data AnalysisThomas Girke		Thomas Girkesoftware28 Apr 20262,50694
sesame
SEnsible Step-wise Analysis of DNA MEthylation BeadChipsWanding Zhou		Wanding Zhousoftware30 Jun 20261,658112
splatter
Simple Simulation of Single-cell RNA Sequencing DataLuke Zappia		Luke Zappiasoftware28 Apr 20261,55361
scds
In-Silico Annotation of Doublets for Single Cell RNA Sequencing DataDennis Kostka		Dennis Kostkasoftware28 Apr 20261,49745
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
speckle
Statistical methods for analysing single cell RNA-seq dataBelinda Phipson		Belinda Phipsonsoftware28 Apr 20261,309170
scmap
A tool for unsupervised projection of single cell RNA-seq dataVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,27062
SGSeq
Splice event prediction and quantification from RNA-seq dataLeonard Goldstein		Leonard Goldsteinsoftware28 Apr 20261,22780
singleCellTK
Comprehensive and Interactive Analysis of Single Cell RNA-Seq DataJoshua David Campbell		Joshua David Campbellsoftware29 Apr 20261,218392
scde
Single Cell Differential ExpressionEvan Biederstedt		Evan Biederstedtsoftware28 Apr 20261,17950
segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,17059
SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to themH. Pagès		H. Pagèssoftware28 Apr 20261,16279
scry
Small-Count Analysis Methods for High-Dimensional DataKelly Street		Kelly Streetsoftware28 Apr 20261,14445
scMerge
scMerge: Merging multiple batches of scRNA-seq dataYingxin Lin		Yingxin Linsoftware28 Apr 20261,142173
satuRn
Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing ApplicationsJeroen Gilis		Jeroen Gilissoftware28 Apr 20261,11657
shinyMethyl
Interactive visualization for Illumina methylation arraysJean-Philippe Fortin		Jean-Philippe Fortinsoftware28 Apr 20261,111159
SCAN.UPC
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)Stephen R. Piccolo		Stephen R. Piccolosoftware28 Apr 20261,026114
SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicingXi Wang		Xi Wangsoftware28 Apr 20261,00798
scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributionsKeegan Korthauer		Keegan Korthauersoftware28 Apr 2026978117
subSeq
Subsampling of high-throughput sequencing count dataAndrew J. Bass		Andrew J. Basssoftware28 Apr 202697845
SMITE
Significance-based Modules Integrating the Transcriptome and EpigenomeNeil Ari Wijetunga		Neil Ari Wijetungasoftware28 Apr 2026976151
SCnorm
Normalization of single cell RNA-seq dataRhonda Bacher		Rhonda Bachersoftware28 Apr 202697167