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SplicingGraphs

Bioc current

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

v1.52.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

Code & tests

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Code

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Topics

Software › ResearchField › Genetics
Software › WorkflowStep › Annotation
Software › Infrastructure › DataRepresentation
Software › WorkflowStep › Visualization
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › AlternativeSplicing
Software › AssayDomain › Transcription
Software › ResearchField › Immunology › ImmunoOncology

People

H. Pagès