shinyMethyl
Bioc currentInteractive visualization for Illumina methylation arrays
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
27 6 exported
Complexity
4.6 avg / 47 max
Call network
27 nodes / 30 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,243
Files
91
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
7
Internal functions
21
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2015-04-06
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 93%
- Return-value docs
- 33%
- References docs
- 0%
Topics
People
- Jean-Philippe Fortin maintainer author
- Kasper Daniel Hansen author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("shinyMethyl")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.