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Topic: MassSpectrometry or Proteomics or Homo_sapiens

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47 packages on Bioconductor tagged MassSpectrometry or Proteomics or Homo_sapiens, most distinct IPs first

MassSpectrometry, Proteomics and Homo_sapiens in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ProtGenerics
Generic infrastructure for Bioconductor mass spectrometry packagesLaurent Gatto		Laurent Gattosoftware28 Apr 202613,0181
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
PSMatch
Handling and Managing Peptide Spectrum MatchesLaurent Gatto		Laurent Gattosoftware28 Apr 20263,831112
pRoloc
A unifying bioinformatics framework for spatial proteomicsLisa Breckels		Lisa Breckelssoftware28 Apr 20261,689230
PTMods
Managing Post-Translational Modifications in RGuillaume Deflandre		Guillaume Deflandresoftware28 Apr 20261,2141
PhosR
A set of methods and tools for comprehensive analysis of phosphoproteomics dataDi Xiao		Di Xiaosoftware28 Apr 20261,095139
PAA
PAA (Protein Array Analyzer)Michael Turewicz		Michael Turewiczsoftware28 Apr 20261,08484
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
proDA
Differential Abundance Analysis of Label-Free Mass Spectrometry DataConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware28 Apr 20261,03428
procoil
Prediction of Oligomerization of Coiled Coil ProteinsUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 20261,00626
pRolocGUI
Interactive visualisation of spatial proteomics dataLisa Breckels		Lisa Breckelssoftware28 Apr 2026976244
PROcess
Ciphergen SELDI-TOF ProcessingXiaochun Li		Xiaochun Lisoftware28 Apr 202689311
proBAMr
Generating SAM file for PSMs in shotgun proteomics dataXiaojing Wang		Xiaojing Wangsoftware28 Apr 202688498
Prostar
Provides a GUI for DAPARSamuel Wieczorek		Samuel Wieczoreksoftware28 Apr 2026880176
Pviz
Peptide Annotation and Data Visualization using GvizRenan Sauteraud		Renan Sauteraudsoftware28 Apr 2026856151
pmp
Peak Matrix Processing and signal batch correction for metabolomics datasetsGavin Rhys Lloyd		Gavin Rhys Lloydsoftware28 Apr 202683965
PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput DataSoo-heang Eo		Soo-heang Eosoftware28 Apr 202682310
PECA
Probe-level Expression Change AveragingTomi Suomi		Tomi Suomisoftware28 Apr 2026796101
Path2PPI
Prediction of pathway-related protein-protein interaction networksOliver Philipp		Oliver Philippsoftware28 Apr 202678017
ProteoDisco
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequencesJob van Riet		Job van Rietsoftware28 Apr 202677599
pathwayPCA
Integrative Pathway Analysis with Modern PCA Methodology and Gene SelectionGabriel Odom		Gabriel Odomsoftware28 Apr 202676812
ptairMS
Pre-processing PTR-TOF-MS Datacamille Roquencourt		camille Roquencourtsoftware28 Apr 2026747200
proBatch
Tools for Diagnostics and Corrections of Batch Effects in ProteomicsYuliya Burankova		Yuliya Burankovasoftware28 Apr 2026746171
PrInCE
Predicting Interactomes from Co-ElutionMichael Skinnider		Michael Skinnidersoftware28 Apr 2026733170
peakPantheR
Peak Picking and Annotation of High Resolution ExperimentsArnaud Wolfer		Arnaud Wolfersoftware28 Apr 2026731150
protGear
Protein Micro Array Data Management and Interactive VisualizationKennedy Mwai		Kennedy Mwaisoftware28 Apr 2026724196
ProteoMM
Multi-Dataset Model-based Differential Expression Proteomics Analysis PlatformYuliya V Karpievitch		Yuliya V Karpievitchsoftware28 Apr 202671477
pepXMLTab
Parsing pepXML files and filter based on peptide FDR.Xiaojing Wang		Xiaojing Wangsoftware28 Apr 20266833
PRONE
The PROteomics Normalization EvaluatorLis Arend		Lis Arendsoftware28 Apr 2026668289
phosphonormalizer
Compensates for the bias introduced by median normalization inSohrab Saraei		Sohrab Saraeisoftware28 Apr 20266217