PrInCE
Bioc currentPredicting Interactomes from Co-Elution
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
33 29 exported
Complexity
4.7 avg / 21 max
Call network
33 nodes / 26 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,035
Files
85
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
29
Internal functions
4
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
84.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
–
License
GPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-09-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 35
- Examples that run
- 100%23 run in a plain check
- Exported functions with examples
- 79%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 3% with a bibliography file
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/fosterlab/prince on 2026-10-21.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| gold_standard | list | 467 elements | No other package |
| kristensen | matrix | 1,875 × 48 | No other package |
| kristensen_gaussians | list | 1,117 elements | No other package |
| scott | matrix | 1,560 × 55 | No other package |
| scott_gaussians | list | 970 elements | No other package |
Topics
People
- Michael Skinnider author translator maintainer
- Leonard Foster author led
- Anders Kristensen contributor
- Nichollas Scott contributor
- R. Greg Stacey contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("PrInCE")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.