peakPantheR
Bioc currentPeak Picking and Annotation of High Resolution Experiments
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files. It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files. A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
136 19 exported
Complexity
4.8 avg / 17 max
Call network
136 nodes / 119 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
24,452
Files
200
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
19
Internal functions
117
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
1.10
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
84.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2019-10-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Arnaud Wolfer author maintainer
- Goncalo Correia author
- Jake Pearce contributor
- Caroline Sands contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("peakPantheR")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.