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Topic: MassSpectrometry or Sequencing or Homo_sapiens

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49 packages on Bioconductor tagged MassSpectrometry or Sequencing or Homo_sapiens, most distinct IPs first

MassSpectrometry, Sequencing and Homo_sapiens in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love		Michael Lovesoftware28 Apr 20265,8043
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
dada2
Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20264,20675
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
microbiome
Microbiome AnalyticsLeo Lahti		Leo Lahtisoftware28 Apr 20263,10980
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
ANCOMBC
Microbiome differential abudance and correlation analyses with bias correctionHuang Lin		Huang Linsoftware28 Apr 20263,000130
mia
Microbiome analysisTuomas Borman		Tuomas Bormansoftware28 Apr 20262,985122
msa
Multiple Sequence AlignmentUlrich Bodenhofer		Ulrich Bodenhofersoftware12 Aug 20262,97216
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
celda
CEllular Latent Dirichlet AllocationJoshua Campbell		Joshua Campbellsoftware28 Apr 20262,337127
rols
An R interface to the Ontology Lookup ServiceSehyun Oh		Sehyun Ohsoftware12 Oct 20261,30422
clusterExperiment
Compare Clusterings for Single-Cell SequencingElizabeth Purdom		Elizabeth Purdomsoftware28 Apr 20261,150147
scMerge
scMerge: Merging multiple batches of scRNA-seq dataYingxin Lin		Yingxin Linsoftware28 Apr 20261,142173
ORFik
Open Reading Frames in GenomicsHaakon Tjeldnes		Haakon Tjeldnessoftware28 Apr 20261,107134
bambu
Context-Aware Transcript Quantification from Long Read RNA-Seq dataYing Chen		Ying Chensoftware28 Apr 20261,06793
EWCE
Expression Weighted Celltype EnrichmentHiranyamaya Dash		Hiranyamaya Dashsoftware29 Apr 2026971203
animalcules
Interactive microbiome analysis toolkitW. Evan Johnson		W. Evan Johnsonsoftware28 Apr 2026957189
philr
Phylogenetic partitioning based ILR transform for metagenomics dataJustin Silverman		Justin Silvermansoftware28 Apr 202693885
immApex
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep LearningNick Borcherding		Nick Borcherdingsoftware28 Apr 202693354
MSstatsPTM
Statistical Characterization of Post-translational ModificationsAnthony Wu		Anthony Wusoftware28 Apr 2026922113
motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding SitesSimon Gert Coetzee		Simon Gert Coetzeesoftware7 Oct 2026876178
HiContacts
Analysing cool files in R with HiContactsJacques Serizay		Jacques Serizaysoftware28 Apr 2026859104
nullranges
Generation of null ranges via bootstrapping or covariate matchingMichael Love		Michael Lovesoftware28 Apr 202685887
NanoMethViz
Visualise methylation data from Oxford Nanopore sequencingShian Su		Shian Susoftware28 Apr 2026818146
biotmle
Targeted Learning with Moderated Statistics for Biomarker DiscoveryNima Hejazi		Nima Hejazisoftware28 Jul 202679493
systemPipeShiny
systemPipeShiny: An Interactive Framework for Workflow Management and VisualizationLe Zhang		Le Zhangsoftware14 Oct 2026750112
methylSig
MethylSig: Differential Methylation Testing for WGBS and RRBS DataRaymond G. Cavalcante		Raymond G. Cavalcantesoftware28 Sep 202674892