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Release: Release 3.23 (2026)

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102 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
S4Vectors
Foundation of vector-like and list-like containers in BioconductorHervé Pagès		Hervé Pagèssoftware16 Sep 202674,7547
enrichplot
Visualization of Functional Enrichment ResultGuangchuang Yu		Guangchuang Yusoftware28 Sep 202630,370128
clusterProfiler
A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu		Guangchuang Yusoftware19 Oct 202629,661138
rhdf5filters
HDF5 Compression FiltersHugo Gruson		Hugo Grusonsoftware28 Jul 202626,2006
BiocIO
Standard Input and Output for Bioconductor PackagesMarcel Ramos		Marcel Ramossoftware28 Apr 202622,8999
GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis		Sean Davissoftware25 Oct 202615,96073
BiocBaseUtils
Utility and internal functions for Bioconductor packagesMarcel Ramos		Marcel Ramossoftware28 May 202615,5122
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love		Michael Lovesoftware28 Apr 20265,8043
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
dada2
Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20264,20675
UCell
Rank-based signature enrichment analysis for single-cell dataMassimo Andreatta		Massimo Andreattasoftware28 Apr 20263,92441
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
BiocCheck
Bioconductor-specific package checksMarcel Ramos		Marcel Ramossoftware2 Jul 20263,36074
microbiome
Microbiome AnalyticsLeo Lahti		Leo Lahtisoftware28 Apr 20263,10980
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
ANCOMBC
Microbiome differential abudance and correlation analyses with bias correctionHuang Lin		Huang Linsoftware28 Apr 20263,000130
mia
Microbiome analysisTuomas Borman		Tuomas Bormansoftware28 Apr 20262,985122
msa
Multiple Sequence AlignmentUlrich Bodenhofer		Ulrich Bodenhofersoftware12 Aug 20262,97216
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
OmnipathR
OmniPath web service client and moreDenes Turei		Denes Tureisoftware30 Apr 20262,68589
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
celda
CEllular Latent Dirichlet AllocationJoshua Campbell		Joshua Campbellsoftware28 Apr 20262,337127
sesame
SEnsible Step-wise Analysis of DNA MEthylation BeadChipsWanding Zhou		Wanding Zhousoftware30 Jun 20261,658112
annotatr
Annotation of Genomic Regions to Genomic AnnotationsRaymond G. Cavalcante		Raymond G. Cavalcantesoftware27 Sep 20261,482118
orthogene
Gene mapping made easyBrian Schilder		Brian Schildersoftware29 Apr 20261,309166
rols
An R interface to the Ontology Lookup ServiceSehyun Oh		Sehyun Ohsoftware12 Oct 20261,30422
AnVIL
Bioconductor on the AnVIL compute environmentMarcel Ramos		Marcel Ramossoftware11 Aug 20261,28477
sesameData
Supporting Data for SeSAMe PackageWanding Zhou		Wanding Zhouexperiment5 May 20261,25072