R Observatory: Metrics for CINNA version 1.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CINNA needs centiserve, which is past its CRAN deadline of Oct 12 to fix its check problems.

CINNA

1.2.2Package record

Deciphering Central Informative Nodes in Network Analysis

0packages depend

7.2Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Minoo AshtianiCRAN page ↗

Computing, comparing, and demonstrating top informative centrality measures within a network. "CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis" provides a comprehensive overview of the package functionality Ashtiani et al. (2018) doi:10.1093/bioinformatics/bty819.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CINNA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cinna

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CINNA

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CINNA

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespace in Imports field not imported from:
  ‘circlize’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 4.4 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-09
ERROR10 OK, 2 NOTE, 1 ERROR2026-06-08
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.2

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 27 (1 internal)
Examples that run: 100%15 run in a plain check
Exported functions with examples: 45%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 59%

Vignettes (1)

CINNA

How these are measured

Downloads

7.2K

CRAN downloads in the past year

Rank #6,002 · ~20/day · ~600/mo

Releases R versions

Daily download trend is not available in this view yet.

56930 days

1.4K90 days

7.2K1 year

Compare downloads with other packages →

Also on122 r2u13 autocran

How downloads are counted

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing CINNA adds 133 packages (60 with compiled code, 121 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (0)

none

Imports (18)

igraph network sna centiserve FactoMineR factoextra GGally pheatmap corrplot dendextend viridis ggplot2 Rtsne plyr circlize intergraphutilsstats

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependencies facing archival

CRAN will archive these unless their check problems are fixed by the date shown. This package needs each one to install.

centiservedeadline passed Oct 12

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Minoo Ashtiani

Author, Maintainer since 1.0.0 (2017)

Mohieddin Jafari

Contributor

Mehdi Mirzaie

Contributor · added in 1.1.50

Releases (15)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
unarchivedReturned to CRAN
2023-08-08
1.2.2Latest
record
2023-08-08 · current release · diff ↗ ·
added 4 exports
summary_calculate_centralities, summary_graph_extract_components, summary_pca_centralities, summary_tsne_centralities
archivedRemoved from CRAN
2023-05-08
requires archived package 'qdapTools'
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.2.0
record
2022-04-07 · diff ↗
1.1.55
record
2021-11-15 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.1.54
record
2021-01-28 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.1.53
record
2019-02-25 · diff ↗
1.1.52
record
2019-02-02 · diff ↗

Show 11 earlier eventsHide 11 earlier events

1.1.51
record
2019-01-13 · diff ↗
1.1.50
record
2018-08-23 · diff ↗ ·
added 5 exports
dangalchev_closeness_centrality, group_centrality, harmonic_centrality, local_bridging_centrality, wiener_index_centrality
1.1.41
record
2018-05-08 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1.4
record
2018-04-10 · diff ↗
1.1.3
record
2018-01-03 · diff ↗
1.1.2
record
2017-10-23 · diff ↗
1.1.1
record
2017-10-08 · diff ↗
1.1.0
record
2017-09-30 · diff ↗ ·
removed 13 exports
calculate.centralities, giant.component.extract, graph.extract.components, misc.extract.components, pca.centralities, proper.centralities, tsne.centralities, visualize.association, visualize.correlations, visualize.dendogram, visualize.graph, visualize.heatmap, visualize.pair.correlation

added 13 exports
calculate_centralities, giant_component_extract, graph_extract_components, misc_extract_components, pca_centralities, proper_centralities, tsne_centralities, visualize_association, visualize_correlations, visualize_dendrogram, visualize_graph, visualize_heatmap, visualize_pair_correlation
1.0.0
record
2017-07-15
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-07-15
Total releases: 15 / 9 yrs
License: GPL-3 OSI
Bundled data: 100 KB / 5 files
Download size: 690 KB

Appears in task views

Network Analysis

Cite

Cite this package

Run in R for the authors' entry:

citation("CINNA")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/bty819.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CINNA version 1.2.2 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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