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CDMConnector

Connect to an OMOP Common Data Model

v2.5.1 · Apr 2, 2026 · Apache License (>= 2)

Description

Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.

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CRAN Check Status

3 NOTE
11 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.1Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 6, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.1Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 3, 2026
ERROR r-devel-linux-x86_64-debian-gcc

tests

Running ‘testthat.R’ [189s/254s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additiona
...[truncated]...
CirceR" is required.
  Backtrace:
      ▆
   1. └─CDMConnector::generateCohortSet(...) at test-omopgenerics.R:13:3
   2.   └─rlang::check_installed("CirceR")
  
  [ FAIL 2 | WARN 0 | SKIP 56 | PASS 286 ]
  Error:
  ! Test failures.
  Execution halted
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.1Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.1Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb
NOTE r-oldrel-macos-x86_64

package dependencies

Package which this enhances but not available for checking: ‘arrow’
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  9.0Mb
  sub-directories of 1Mb or more:
    doc    5.6Mb
    help   2.0Mb

Reverse Dependencies (19)

Dependency Network

Dependencies Reverse dependencies httr dplyr dbplyr DBI checkmate cli purrr rlang tidyselect glue withr lifecycle stringr stringi generics +4 more dependencies CohortCharacteristics CohortSurvival CohortSymmetry DrugExposureDiagnostics IncidencePrevalence TestGenerator TreatmentPatterns CodelistGenerator CohortConstructor DrugUtilisation MeasurementDiagnostics OmopConstructor OmopOnSpark OmopSketch OmopViewer +4 more reverse deps CDMConnector

Version History

updated 2.5.1 ← 2.5.0 diff Apr 3, 2026
new 2.5.0 Mar 10, 2026
updated 2.5.0 ← 2.4.0 diff Mar 7, 2026
updated 2.4.0 ← 2.3.0 diff Feb 15, 2026
updated 2.3.0 ← 2.2.0 diff Jan 9, 2026
updated 2.2.0 ← 2.1.1 diff Sep 15, 2025
updated 2.1.1 ← 2.1.0 diff Jul 9, 2025
updated 2.1.0 ← 2.0.0 diff Jun 24, 2025
updated 2.0.0 ← 1.7.0 diff Feb 21, 2025
updated 1.7.0 ← 1.6.1 diff Dec 18, 2024
updated 1.6.1 ← 1.6.0 diff Nov 28, 2024
updated 1.6.0 ← 1.5.0 diff Nov 12, 2024
updated 1.5.0 ← 1.4.0 diff Jul 15, 2024
updated 1.4.0 ← 1.3.2 diff May 2, 2024
updated 1.3.2 ← 1.3.1 diff Apr 30, 2024
updated 1.3.1 ← 1.3.0 diff Apr 1, 2024
updated 1.3.0 ← 1.2.1 diff Feb 4, 2024
updated 1.2.1 ← 1.2.0 diff Jan 17, 2024
updated 1.2.0 ← 1.1.4 diff Oct 30, 2023
updated 1.1.4 ← 1.1.3 diff Oct 19, 2023