OmopConstructor
Build Tables in the OMOP Common Data Model
v0.3.0
·
Mar 26, 2026
·
Apache License (>= 2)
Description
Provides functionality to construct standardised tables from health care data formatted according to the Observational Medical Outcomes Partnership (OMOP) Common Data Model. The package includes tools to build key tables such as observation period and drug era, among others.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'omopgenerics', 'PatientProfiles' Packages suggested but not available for checking: 'CDMConnector', 'omock', 'OmopSketch', 'visOmopResults' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 24, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 17, 2026
ERROR
r-release-linux-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘achilles.Rmd’ using rmarkdown Quitting from achilles.Rmd:114-125 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_n ...[truncated]... th diagnostics: The package "duckdb" is required. --- failed re-building ‘buildObservationPeriod.Rmd’ SUMMARY: processing the following files failed: ‘achilles.Rmd’ ‘buildObservationPeriod.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 15, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 13, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘achilles.Rmd’ using rmarkdown Quitting from achilles.Rmd:114-125 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_n ...[truncated]... th diagnostics: The package "duckdb" is required. --- failed re-building ‘buildObservationPeriod.Rmd’ SUMMARY: processing the following files failed: ‘achilles.Rmd’ ‘buildObservationPeriod.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
WARNING 12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE May 9, 2026
WARNING
r-devel-linux-x86_64-debian-gcc
PDF version of manual
LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found:
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 27, 2026
ERROR
r-devel-linux-x86_64-fedora-clang
whether package can be installed
Installation failed. See ‘/data/gannet/ripley/R/packages/tests-clang/OmopConstructor.Rcheck/00install.out’ for details.