CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use
v4.0.2
·
Jan 19, 2026
·
Apache License (>= 2)
Description
Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'omopgenerics', 'PatientProfiles' Packages suggested but not available for checking: 'CDMConnector', 'visOmopResults', 'CohortConstructor', 'flextable', 'omock' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 24, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 17, 2026
ERROR
r-release-linux-x86_64
tests
Running ‘testthat.R’ [39s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional
...[truncated]...
.
Backtrace:
▆
1. └─CodelistGenerator::mockVocabRef("database") at test-summariseAchillesCodeUse.R:64:3
2. └─rlang::check_installed("duckdb")
[ FAIL 8 | WARN 0 | SKIP 51 | PASS 179 ]
Error:
! Test failures.
Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 15, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 13, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
tests
Running ‘testthat.R’ [26s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional
...[truncated]...
.
Backtrace:
▆
1. └─CodelistGenerator::mockVocabRef("database") at test-summariseAchillesCodeUse.R:64:3
2. └─rlang::check_installed("duckdb")
[ FAIL 8 | WARN 0 | SKIP 51 | PASS 179 ]
Error:
! Test failures.
Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
ERROR
r-release-macos-x86_64
package dependencies
Package required but not available: ‘PatientProfiles’ Package suggested but not available for checking: ‘CohortConstructor’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Reverse Dependencies (10)
Dependency Network
Version History
29 tracked
new
4.0.2
Mar 10, 2026