Q4 2014 in CRAN

Final

Part of 2014.

196

New packages

862

Updated

Archived

22.3M

Downloads

New packages (60+)

lazyeval Lazy (Non-Standard) Evaluation	2014-10-01
measuRing Detection and Control of Tree-Ring Widths on Scanned Image Sections	2014-10-01
mycor Automatic Correlation and Regression Test in a 'data.frame'	2014-10-02
stabs Stability Selection with Error Control	2014-10-02
WRS2 A Collection of Robust Statistical Methods	2014-10-03
enpls Ensemble Partial Least Squares Regression	2014-10-03
msda Multi-Class Sparse Discriminant Analysis	2014-10-03
DynNom Visualising Statistical Models using Dynamic Nomograms	2014-10-04
ropensecretsapi R Package for the OpenSecrets.org API	2014-10-05
MareyMap Estimation of Meiotic Recombination Rates Using Marey Maps	2014-10-07
PerFit Person Fit	2014-10-07
ibelief Belief Function Implementation	2014-10-07
qicharts Quality Improvement Charts	2014-10-07
vegan3d Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package	2014-10-07
bdscale Remove Weekends and Holidays from ggplot2 Axes	2014-10-08
CEC Cross-Entropy Clustering	2014-10-09
BNSP Bayesian Non- And Semi-Parametric Model Fitting	2014-10-10
adwave Wavelet Analysis of Genomic Data from Admixed Populations	2014-10-10
RAdwords Loading Google Adwords Data into R	2014-10-11
BSGW Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression	2014-10-12
CP Conditional Power Calculations	2014-10-13
dataRetrieval Retrieval Functions for USGS and EPA Hydrology and Water Quality Data	2014-10-13
flam Fits Piecewise Constant Models with Data-Adaptive Knots	2014-10-13
prettyunits Pretty, Human Readable Formatting of Quantities	2014-10-13
rex Friendly Regular Expressions	2014-10-14
bio3d Biological Structure Analysis	2014-10-15
gets General-to-Specific (GETS) Modelling and Indicator Saturation Methods	2014-10-15
logbin Relative Risk Regression Using the Log-Binomial Model	2014-10-16
rfoaas R Interface to 'FOAAS'	2014-10-16
rivernet Read, Analyze and Plot River Networks	2014-10-16
statar Tools Inspired by 'Stata' to Manipulate Tabular Data	2014-10-16
windex Analysing Convergent Evolution using the Wheatsheaf Index	2014-10-16
CLME Constrained Inference for Linear Mixed Effects Models	2014-10-17
RMKdiscrete Sundry Discrete Probability Distributions	2014-10-17
ecoval Procedures for Ecological Assessment of Surface Waters	2014-10-17
highTtest Simultaneous Critical Values for t-Tests in Very High Dimensions	2014-10-17
mdscore Improved Score Tests for Generalized Linear Models	2014-10-17
pBrackets Plot Brackets	2014-10-17
segmag Determine Event Boundaries in Event Segmentation Experiments	2014-10-17
sisVIVE Some Invalid Some Valid Instrumental Variables Estimator	2014-10-17
landpred Landmark Prediction of a Survival Outcome	2014-10-18
multispatialCCM Multispatial Convergent Cross Mapping	2014-10-19
JMdesign Joint Modeling of Longitudinal and Survival Data - Power Calculation	2014-10-20
ore An R Interface to the Onigmo Regular Expression Library	2014-10-20
DetMCD Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)	2014-10-21
cdcsis Conditional Distance Correlation Based Feature Screening and Conditional Independence Inference	2014-10-21
openssl Toolkit for Encryption, Signatures and Certificates Based on OpenSSL	2014-10-21
scrm Simulating the Evolution of Biological Sequences	2014-10-21
glmvsd Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models	2014-10-22
saeSim Simulation Tools for Small Area Estimation	2014-10-22
traj Feature-Based Clustering of Longitudinal Trajectories	2014-10-22
PHENIX Phenotypic Integration Index	2014-10-24
ruv Detect and Remove Unwanted Variation using Negative Controls	2014-10-24
BayesMixSurv Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification	2014-10-25
choroplethrMaps Contains Maps Used by the 'choroplethr' Package	2014-10-25
qdm Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments	2014-10-27
MfUSampler Multivariate-from-Univariate (MfU) MCMC Sampler	2014-10-28
settings Software Option Settings Manager for R	2014-10-28
DAMOCLES Dynamic Assembly Model of Colonization, Local Extinction and Speciation	2014-10-29
addreg Additive Regression for Discrete Data	2014-10-29

Archived / removed

Why

5 the request of the maintainer
3 it depends on 'mvpart', which was archived
2 maintainer address <christian.bender@tron-mainz.de> bounced
2 maintainer address <tristan.senga-kiesse@lcpc.fr> bounced
2 reason not recorded
1 'metrumrg' on which is depends by the same author was. And the maintainer email address bounced
1 . The package 'nacopula' has been merged with package 'copula', so please use that instead
1 This package is now available from Bioconductor 3.0 and later, only

easingr the service it used is no longer available	2014-12-29
Statomica	2014-12-26
lmbc the maintainer did not respond to a request to get rid of a dependency that was archived	2014-12-22
mseq the maintainer was unable to follow the procedures to fix the maintainer email address	2014-12-22
phyext maintainer address <stack@psu.edu> bounced	2014-12-22
HIBAG repeated policy violations by the maintainer. This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/HIBAG.html>	2014-12-20
PKmodelFinder requested by the maintainer <lee.eunk@ewha.ac.kr>	2014-12-20
SCEPtERextras requested by the maintainer <mattdell@fastmail.fm>	2014-12-20
gdsfmt repeated policy violations by the maintainer. This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/gdsfmt.html>	2014-12-20
KsPlot it depends on 'mvpart', which was archived	2014-12-13
MVPARTwrap it depends on 'mvpart', which was archived	2014-12-13
Tampo it depends on 'mvpart', which was archived	2014-12-13
mvpart UBSAN errors were not corrected after months of reports and two deadlines	2014-12-13
DierckxSpline the request of the maintainer	2014-12-09
BayesPen maintainer address <ander_wilson@ncsu.edu> bounced	2014-12-07
ENA maintainer address <guanghua.xiao@utsouthwestern.edu> bounced	2014-12-07
EpiResTest segfaulted by using memory after it was freed, and compared floating-point quantities without a tolerance	2014-12-07
FPDC maintainer address <ctortora@uoguelph.ca> bounced	2014-12-07
MVpower maintainer address <yguo@bg-medicine.com> bounced	2014-12-07
MiClip maintainer address <tao.wang@utsouthwestern.edu> bounced	2014-12-07
OneHandClapping maintainer address <duemcke@genzentrum.lmu.de> bounced	2014-12-07
PSMix maintainer address <jgama@abo.fi> bounced	2014-12-07
RECSO maintainer address <tsofer@hsph.harvard.edu> bounced	2014-12-07
SDBP maintainer address <ren_az@hotmail.co.jp> bounced	2014-12-07
TRIANG maintainer address <tristan.senga-kiesse@lcpc.fr> bounced	2014-12-07
TRIANGG maintainer address <tristan.senga-kiesse@lcpc.fr> bounced	2014-12-07
TSAgg maintainer address <jason.lessels@sydney.edu.au> bounced	2014-12-07
avgrankoverlap maintainer address <sunor@stanford.edu> bounced	2014-12-07
bootfs maintainer address <christian.bender@tron-mainz.de> bounced	2014-12-07
capme maintainer address <jichun@temple.edu> bounced	2014-12-07
changeLOS maintainer address <arthur.allignol@fdm.uni-freiburg.de> bounced	2014-12-07
comorbidities maintainer address <pbgerrard@partners.org> bounced	2014-12-07
complex.surv.dat.sim maintainer address <david.morina@ctns.cat> bounced	2014-12-07
ddepn maintainer address <christian.bender@tron-mainz.de> bounced	2014-12-07
factas maintainer address <romain.bar@univ-lorraine.fr> bounced	2014-12-07
gcExplorer maintainer address <scharl@ci.tuwien.ac.at> bounced	2014-12-07
glmperm maintainer address <w.werft@dkfz-heidelberg.de> bounced	2014-12-07
iScreen maintainer address <rui.zhong@utsouthwestern.edu> bounced	2014-12-07
malaria.em maintainer address <xli@bg-medicine.com> bounced	2014-12-07
margie maintainer address <elisa.loza@rothamsted.ac.uk> bounced	2014-12-07
marginalmodelplots maintainer address <aredd@stat.tamu.edu> bounced	2014-12-07
mixedQF maintainer address <jleger@agroparistech.fr> bounced	2014-12-07
review maintainer address <timb@metrumrg.com> bounced	2014-12-07
waldwolf maintainer address <contato@jodavidferreira.com> bounced	2014-12-07
AWS.tools requested by the maintainer <armstrong.whit@gmail.com>	2014-12-05
PKtools requested by the maintainer <sblanchard@coh.org>	2014-12-05
fork was not portable even to all the tested Unix platforms	2014-12-05
randomSurvivalForest after 20 months of deprecation in favour of 'randomForestSRC', by the maintainer	2014-12-04
nacopula . The package 'nacopula' has been merged with package 'copula', so please use that instead	2014-12-02
EVER policy violations	2014-11-30
MLEP maintainer address bounced with a permanent error	2014-11-30
icomp requested by the maintainer <troutinthemilk@gmail.com>	2014-11-26
audited 'metrumrg' on which is depends by the same author was. And the maintainer email address bounced	2014-11-25
metrumrg requests to remove the dependence on the non-portable package 'fork' were not acted on for months. And the maintainer email address bounced	2014-11-25
DRI maintainer address <ksalari@stanford.edu> bounced	2014-11-24
LargeRegression maintainer address <<jeff.ct.wong@stanford.edu> bounced	2014-11-24
MMST requested by the maintainer <keith.a.halbert@gmail.com>	2014-11-24
SesIndexCreatoR maintainer address <benoit.lalloue@ehesp.fr> bounced	2014-11-24
dse1 the request of the maintainer	2014-11-24
dse2 the request of the maintainer	2014-11-24

Downloads

22.3M

Total downloads

+41.3%

vs prior period

Notable

Major version jumps

cna 0.1-3→1.0-0 stm 0.6.24→1.0.0 phenology 3.72→4.0 sft 1.0-1→2.0-7 geospt 0.5-0→1.0-0 BIFIEsurvey 0.3-47→1.0 Bergm 2.9.1→3.0 randomLCA 0.9-0→1.0-0 evtree 0.1-5→1.0-0 SMR 1.0.0→2.0 StMoSim 2.2→3.0 pdc 0.5→1.0 FLSSS 2.0.1→3.0 stepp 2.3-2→3.0-11 RSQLite 0.11.4→1.0.0 choroplethr 1.7.0→2.0.0 sirt 0.47-36→1.0-3 SKAT 0.95→1.0 CountsEPPM 1.0→2.0 pvar 1.0.9→2.0

First-time CRAN authors

Felipe Bravo ×3 Wilson Lara ×3 Carlos Sierra Keon-Woong Moon ×12 Miao-Zhu Li ×3 Qing Mai ×2 Indrajeet Patil ×25 Rand Wilcox Jacob Anhoej ×2 Laurent Gueguen Gabriel Marais Clément Rezvoy Timo Roeder Jorge N. Tendeiro ×3 Dave Mills Simon Garnier ×7 Kamieniecki Konrad Spurek Przemyslaw Murray Cox Jean Sanderson