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Simulating the Evolution of Biological Sequences

v1.7.5 · Jan 8, 2024 · GPL (>= 3)

Description

A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution, see Staab et al. (2015) <doi:10.1093/bioinformatics/btu861>. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.

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CRAN Check Status

14 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	111s
r-devel-linux-x86_64-debian-gcc	OK	76.4s
r-devel-linux-x86_64-fedora-clang	OK	189s
r-devel-linux-x86_64-fedora-gcc	OK	205.9s
r-devel-macos-arm64	OK	22s
r-devel-windows-x86_64	OK	167s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	61s
r-oldrel-windows-x86_64	OK	175s
r-patched-linux-x86_64	OK	102.1s
r-release-linux-x86_64	OK	94.7s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	98s
r-release-windows-x86_64	OK	166s

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (3)

imports

coala poolHelper

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jackalope

Dependency Network

Version History

new 1.7.5 Mar 10, 2026

updated 1.7.5 ← 1.7.4-0 diff Jan 7, 2024

updated 1.7.4-0 ← 1.7.3-1 diff Feb 13, 2022

updated 1.7.3-1 ← 1.7.2-4 diff Nov 18, 2018

updated 1.7.2-4 ← 1.7.2-3 diff Jun 29, 2018

updated 1.7.2-3 ← 1.7.2-1 diff Jun 17, 2018

updated 1.7.2-1 ← 1.7.2-0 diff Dec 7, 2017

updated 1.7.2-0 ← 1.6.0-2 diff Dec 10, 2016

updated 1.6.0-2 ← 1.5.0-1 diff Jun 6, 2015

updated 1.5.0-1 ← 1.3-3 diff Apr 10, 2015

updated 1.3-3 ← 1.3-2 diff Nov 17, 2014

updated 1.3-2 ← 1.3-1 diff Oct 21, 2014

new 1.3-1 Oct 20, 2014