R Observatory: Metrics for HIBAG version 1.2.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2014-12-20. Its history is shown below.

Reason: repeated policy violations by the maintainer. This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/HIBAG.html>

Details below reflect version 1.2.4, its last release before removal.

HIBAG

1.2.4Package record

HIBAG -- HLA Genotype Imputation with Attribute Bagging

0packages dependsuggested by 1

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Xiuwen ZhengCRAN page ↗GitHub ↗Website ↗

HIBAG is a state of the art software package for imputing HLA types using SNP data, and it uses the R statistical programming language. HIBAG can be used by researchers with published parameter estimates instead of requiring access to large training sample datasets. It combines the concepts of attribute bagging, an ensemble classifier method, with haplotype inference for SNPs and HLA types. Attribute bagging is a technique which improves the accuracy and stability of classifier ensembles using bootstrap aggregating and random variable selection.

Install

BioconductorR (source archive)pak (dev)

BiocManager::install("HIBAG")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/HIBAG/HIBAG_1.2.4.tar.gz"
pkgFile <- "HIBAG_1.2.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.2.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("zhengxwen/HIBAG")

Development version from zhengxwen/HIBAG. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.4

READMENoVignettesYes · 1 · staticNEWSYes · 100% structuredCitation fileYes · cites a publicationWebsiteYes

Help pages: 59includes a package overview page
Examples that run: 100%33 run in a plain check
Exported functions with examples: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 12%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on316 r2u4K bioconda

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.14.0

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

parallel

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Suggested by 1

Suggests, most downloaded first

PONG2

How these are counted

Code & Tests

Datasets

People & History

People (2)

Xiuwen Zheng

Contributor

Bruce S. Weir

Contributor · added in 1.1.0

Maintainer since 0.9.1 (2012)

Listed in earlier versions (1)

Bruce Weir

no longer listed · 1.0.0

Releases (12)

Pick two releases to compare their code metrics.

R
R 3.2.0 released · 2015-04-16
archivedRemoved from CRAN
2014-12-20
repeated policy violations by the maintainer. This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/HIBAG.html>
1.2.4
record
2014-09-26 · diff ↗
R
R 3.1.0 released · 2014-04-10
1.2.3
record
2014-03-05 · diff ↗
1.2.2
record
2013-12-22 · diff ↗
1.2.1
record
2013-10-29 · diff ↗
1.2.0.1
record
2013-08-12 · diff ↗
1.2.0
record
2013-08-01 · diff ↗ ·
removed 1 export
pattern:.

added 3 exports
pattern:^[^\\.], .onAttach, .Last.lib
1.1.0
record
2013-06-02 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.0.0
record
2013-03-26 · diff ↗
0.9.4
record
2012-11-14 · diff ↗
0.9.3
record
2012-10-20 · diff ↗
0.9.2
record
2012-08-04 · diff ↗
0.9.1
record
2012-06-20

Show 1 earlier eventHide 1 earlier event

R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-06-20
Total releases: 12 / 14 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.14.0
Bundled data: 49 KB / 2 files

Cite

Cite this package

Run in R for the authors' entry:

citation("HIBAG")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1038/tpj.2013.18.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HIBAG version 1.2.4 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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