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SKAT

SNP-Set (Sequence) Kernel Association Test

v2.2.5 · Jan 15, 2023 · GPL (>= 2)

Description

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

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CRAN Check Status

2 NOTE
12 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
                      comment = "Shawn"),
               person(given = "Zhangchen",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Larisa"),
                      family = "Miropolsky",
                      role = "aut"),
               person(given = "Michael",
                      family = "Wu",
                      role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
                      comment = "Shawn"),
               person(given = "Zhangchen",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Larisa"),
                      family = "Miropolsky",
                      role = "aut"),
               person(given = "Michael",
                      family = "Wu",
                      role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
               
...[truncated]...
            role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
               
...[truncated]...
            role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.

Reverse Dependencies (14)

Dependency Network

Dependencies Reverse dependencies Matrix SPAtest RSpectra FSTpackage LGEWIS LGRF ZIM4rv AllelicSeries GBJ MetaSKAT SMUT zfa BGData FastKM GRAB bigQF seqminer SKAT

Version History

new 2.2.5 Mar 10, 2026
updated 2.2.5 ← 2.2.4 diff Jan 14, 2023
updated 2.2.4 ← 2.0.1 diff Mar 28, 2022
updated 2.0.1 ← 2.0.0 diff Oct 19, 2020
updated 2.0.0 ← 1.3.2.1 diff Mar 8, 2020
updated 1.3.2.1 ← 1.3.2 diff Aug 2, 2017
updated 1.3.2 ← 1.3.0 diff Jul 23, 2017
updated 1.3.0 ← 1.2.1 diff May 17, 2017
updated 1.2.1 ← 1.1.4 diff Jun 27, 2016
updated 1.1.4 ← 1.1.2 diff Apr 19, 2016
updated 1.1.2 ← 1.0.9 diff Sep 7, 2015
updated 1.0.9 ← 1.0.7 diff Jun 13, 2015
updated 1.0.7 ← 1.0.1 diff Apr 18, 2015
updated 1.0.1 ← 1.0 diff Nov 3, 2014
updated 1.0 ← 0.95 diff Oct 30, 2014
updated 0.95 ← 0.93 diff Feb 17, 2014
updated 0.93 ← 0.92 diff Nov 17, 2013
updated 0.92 ← 0.91 diff Oct 8, 2013
updated 0.91 ← 0.90 diff Jun 2, 2013
updated 0.90 ← 0.83 diff May 22, 2013