SKAT
SNP-Set (Sequence) Kernel Association Test
Description
Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
Downloads
1.1K
Last 30 days
3440th
3.3K
Last 90 days
42.8K
Last year
Trend: +21.4% (30d vs prior 30d)
43
Last 30 days
151
Last 90 days
486
Last year
Trend: -4.4% (30d vs prior 30d)
5
Last 7 days
10
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
1.2K
Last 30 days
3.8K
Last 90 days
12.2K
Last year
Trend: -4.8% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Seunggeun",
family = "Lee",
role = "aut",
comment = "Shawn"),
person(given = "Zhangchen",
family = "Zhao",
role = "aut"),
person(given = c("with", "contributions", "from", "Larisa"),
family = "Miropolsky",
role = "aut"),
person(given = "Michael",
family = "Wu",
role = "aut"),
person(given = "Seunggeun",
family = "Lee",
role = "cre",
email = "lee7801@snu.ac.kr",
comment = "Shawn"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Seunggeun",
family = "Lee",
role = "aut",
comment = "Shawn"),
person(given = "Zhangchen",
family = "Zhao",
role = "aut"),
person(given = c("with", "contributions", "from", "Larisa"),
family = "Miropolsky",
role = "aut"),
person(given = "Michael",
family = "Wu",
role = "aut"),
person(given = "Seunggeun",
family = "Lee",
role = "cre",
email = "lee7801@snu.ac.kr",
comment = "Shawn"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Seunggeun",
family = "Lee",
role = "aut",
...[truncated]...
role = "aut"),
person(given = "Seunggeun",
family = "Lee",
role = "cre",
email = "lee7801@snu.ac.kr",
comment = "Shawn"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Seunggeun",
family = "Lee",
role = "aut",
...[truncated]...
role = "aut"),
person(given = "Seunggeun",
family = "Lee",
role = "cre",
email = "lee7801@snu.ac.kr",
comment = "Shawn"))
as necessary.
Code
Structure
Lines of code
31,810
Files
116
Compiled share
21%
Has compiled src
Yes
Language breakdown
API
Exported functions
55
Internal functions
184
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
–
\dontrun example ratio
–
Roxygen coverage
0%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.13.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
27
First release
2011-02-26
Latest release
2023-01-15
Avg cadence
83 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.