Q2 2009 in CRAN

Part of 2009.

Final

New packages

386

Updated

Archived

+66

Net growth

New packages (60+)

orthogonalsplinebasis Orthogonal B-Spline Basis Functions	2009-04-03
ascii Export R Objects to Several Markup Languages	2009-04-04
HaploSim Functions to Simulate Haplotypes	2009-04-14
mc2d Tools for Two-Dimensional Monte-Carlo Simulations	2009-04-14
EngrExpt Data sets from "Introductory Statistics for Engineering Experimentation"	2009-04-15
OrdMonReg Compute Least Squares Estimates of One Bounded or Two Ordered Isotonic Regression Curves	2009-04-15
hash Full Featured Implementation of Hash Tables/Associative Arrays/Dictionaries	2009-04-15
influence.ME Tools for Detecting Influential Data in Mixed Effects Models	2009-04-15
plspm Partial Least Squares Path Modeling (PLS-PM)	2009-04-15
FBN FISH Based Normalization and Copy Number Inference of SNP Microarray Data	2009-04-16
FD Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology	2009-04-16
OrdFacReg Least Squares, Logistic, and Cox-Regression with Ordered Predictors	2009-04-16
RMTstat Distributions, Statistics and Tests Derived from Random Matrix Theory	2009-04-17
diseasemapping Modelling Spatial Variation in Disease Risk for Areal Data	2009-04-17
powerSurvEpi Power and Sample Size Calculation for Survival Analysis of Epidemiological Studies	2009-04-17
gputools GPU Drop-Ins for Statistics on Wide Data	2009-04-19
MixSim Simulating Data to Study Performance of Clustering Algorithms	2009-04-22
RDS Respondent-Driven Sampling	2009-04-22
VarianceGamma The Variance Gamma Distribution	2009-04-22
CHNOSZ Thermodynamic Calculations and Diagrams for Geochemistry	2009-04-23
ez Easy Analysis and Visualization of Factorial Experiments	2009-04-26
plan Tools for Project Planning	2009-04-26
emplik2 Empirical Likelihood Ratio Test for Two-Sample U-Statistics with Censored Data	2009-04-28
FSelector Selecting Attributes	2009-05-06
RgoogleMaps Overlays on Static Maps	2009-05-07
mixAK Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering	2009-05-07
MASS Support Functions and Datasets for Venables and Ripley's MASS	2009-05-08
class Functions for Classification	2009-05-08
diffusionMap Diffusion Map	2009-05-08
nnet Feed-Forward Neural Networks and Multinomial Log-Linear Models	2009-05-08
spatial Functions for Kriging and Point Pattern Analysis	2009-05-08
optBiomarker Estimation of Optimal Number of Biomarkers for Two-Group Microarray Based Classifications at a Given Error Tolerance Level for Various Classification Rules	2009-05-10
FRB Fast and Robust Bootstrap	2009-05-13
pegas Population and Evolutionary Genetics Analysis System	2009-05-13
tractor.base Read, Manipulate and Visualise Magnetic Resonance Images	2009-05-14
HTMLUtils Facilitates Automated HTML Report Creation	2009-05-20
pedigreemm Pedigree-Based Mixed-Effects Models	2009-05-24
DoE.base Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages	2009-05-25
Haplin Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes	2009-05-27
simctest Safe Implementation of Monte Carlo Tests	2009-05-28
rainbow Bagplots, Boxplots and Rainbow Plots for Functional Data	2009-05-29
CDFt Downscaling and Bias Correction via Non-Parametric CDF-Transform	2009-06-02
TripleR Social Relation Model (SRM) Analyses for Single or Multiple Groups	2009-06-02
cmm Categorical Marginal Models	2009-06-03
countrycode Convert Country Names and Country Codes	2009-06-03
tnet Weighted, Two-Mode, and Longitudinal Networks Analysis	2009-06-03
isa2 The Iterative Signature Algorithm	2009-06-05
metafor Meta-Analysis Package for R	2009-06-05
descr Descriptive Statistics	2009-06-08
R.filesets Easy Handling of and Access to Files Organized in Structured Directories	2009-06-09
aroma.apd A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]	2009-06-14
kmi Kaplan-Meier Multiple Imputation for the Analysis of Cumulative Incidence Functions in the Competing Risks Setting	2009-06-14
matrixStats Functions that Apply to Rows and Columns of Matrices (and to Vectors)	2009-06-14
mediation Causal Mediation Analysis	2009-06-14
pamm Power Analysis for Random Effects in Mixed Models	2009-06-14
robustX 'eXtra' / 'eXperimental' Functionality for Robust Statistics	2009-06-14
aroma.core Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework	2009-06-16
glmulti Model Selection and Multimodel Inference Made Easy	2009-06-20
dirmult Estimation in Dirichlet-Multinomial Distribution	2009-06-22
infotheo Information-Theoretic Measures	2009-06-25

Archived / removed

Why

6 reason not recorded

verify	2009-06-23
ccems	2009-06-14
SQLiteDF	2009-05-26
fCalendar	2009-05-25
fSeries	2009-05-25
markerSearchPower	2009-04-15

Notable

Major version jumps

gamlss.cens 1.9.0→2.0.0 gamlss.dist 1.9-0→2.0-0 gamlss.mx 1.9-0→2.0-0 gamlss.tr 1.9-0→2.0-0 bigmemory 2.3→3.5 dlm 0.99-0→1.0-0 fgui 0.3.3→1.0-0 onemap 0.1-1→1.0-0 plink 0.1-1→1.0.0 SpatialNP 0.9.1→1.00 archetypes 0.1-1→1.0 lmomRFA 1.0→2.0 snowFT 0.0-4→1.0-1 sna 1.5→2.0 conf.design 0.0-4→1.0

First-time CRAN authors

David Hajage ×3 Matti Pastell John Bastiaansen Yu Chen Arie Havelaar ×2 Fadoua Balabdaoui ×2 Christopher Brown ×8 John Hughes ×6 Rense Nieuwenhuis ×2 Ben Pelzer Giorgio Russolillo Gaston Sanchez ×5 Filippo Santambrogio Manfred Te Grotenhuis Laura Trinchera Etienne Laliberté ×2 Bill Shipley ×2 Evan Biederstedt ×15 Patrick Brown ×6 Jorge Chavarro