diseasemapping
Modelling Spatial Variation in Disease Risk for Areal Data
Description
Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using 'INLA'. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.
Downloads
506
Last 30 days
7915th
1K
Last 90 days
4.3K
Last year
Trend: +109.1% (30d vs prior 30d)
0
Last 30 days
24
Last 90 days
112
Last year
Trend: -100% (30d vs prior 30d)
3
Last 7 days
11
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
package dependencies
Package which this enhances but not available for checking: ‘INLA’
package dependencies
Package which this enhances but not available for checking: ‘INLA’
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
18 7 exported
Complexity
6.6 avg / 25 max
Call network
18 nodes / 7 edges
Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,805
Files
49
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
10
Testing & CI
Has tests
Yes
Test-to-code ratio
0.13
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL
License flags
not SPDX, not OSI
History
Versions
34
First release
2009-04-01
Latest release
2024-02-09
Avg cadence
42 days
Cold removal rate
100%
Dep drift
10
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.