Q1 2009 in CRAN

Part of 2009.

Final

New packages

464

Updated

Archived

+33

Net growth

New packages (60+)

rcdklibs The CDK Libraries Packaged for R	2009-01-08
penalizedSVM Feature Selection SVM using Penalty Functions	2009-01-14
fishmethods Fishery Science Methods and Models	2009-01-15
clinsig Clinical Significance Functions	2009-01-20
robCompositions Compositional Data Analysis	2009-01-20
x12 Interface to 'X12-ARIMA'/'X13-ARIMA-SEATS' and Structure for Batch Processing of Seasonal Adjustment	2009-01-20
ScottKnott The ScottKnott Clustering Algorithm	2009-01-23
svGUI 'SciViews::R' - Manage GUIs in R	2009-01-23
svIDE Functions to Ease Interactions Between R and IDE or Code Editors	2009-01-23
svMisc Miscellaneous Functions for 'SciViews::R'	2009-01-23
svSocket 'SciViews' - Socket Server	2009-01-23
mmcm Modified Maximum Contrast Method	2009-01-26
operators Additional Binary Operators	2009-01-26
sdcTable Methods for Statistical Disclosure Control in Tabular Data	2009-01-26
MCMCglmm MCMC Generalised Linear Mixed Models	2009-01-27
truncreg Truncated Gaussian Regression Models	2009-02-03
ucminf General-Purpose Unconstrained Non-Linear Optimization	2009-02-03
flashClust Implementation of Fast Hierarchical Clustering	2009-02-05
nleqslv Solve Systems of Nonlinear Equations	2009-02-07
cellVolumeDist Functions to Fit Cell Volume Distributions and Thereby Estimate Cell Growth Rates and Division Times	2009-02-09
pspearman Spearman's Rank Correlation Test	2009-02-11
FKF Fast Kalman Filter	2009-02-12
PMA Penalized Multivariate Analysis	2009-02-12
gogarch Generalized Orthogonal GARCH (GO-GARCH) Models	2009-02-12
fechner Fechnerian Scaling of Discrete Object Sets	2009-02-16
fitdistrplus Help to Fit of a Parametric Distribution to Non-Censored or Censored Data	2009-02-16
vowels Vowel Manipulation, Normalization, and Plotting	2009-02-16
afc Generalized Discrimination Score	2009-02-18
registry Infrastructure for R Package Registries	2009-02-19
RcmdrPlugin.survival R Commander Plug-in for the 'survival' Package	2009-02-20
WWGbook Functions and Datasets for WWGbook	2009-02-24
pedigree Pedigree Functions	2009-02-24
DAKS Data Analysis and Knowledge Spaces	2009-02-26
metaMA Meta-Analysis for MicroArrays	2009-02-26
BAS Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling	2009-03-02
mhsmm Inference for Hidden Markov and Semi-Markov Models	2009-03-02
OAIHarvester Harvest Metadata Using OAI-PMH Version 2.0	2009-03-03
lmomRFA Regional Frequency Analysis using L-Moments	2009-03-03
sparseLDA Sparse Discriminant Analysis	2009-03-03
Rcsdp R Interface to the CSDP Semidefinite Programming Library	2009-03-08
plotpc Plot Principal Component Histograms Around a Scatter Plot	2009-03-10
BayesX R Utilities Accompanying the Software Package BayesX	2009-03-11
Oncotree Estimating Oncogenetic Trees	2009-03-12
jointDiag Joint Approximate Diagonalization of a Set of Square Matrices	2009-03-12
spcosa Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata	2009-03-13
spuRs Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"	2009-03-13
TeachingSampling Selection of Samples and Parameter Estimation in Finite Population	2009-03-14
aspect A General Framework for Multivariate Analysis with Optimal Scaling	2009-03-14
metacor Meta-Analytic Effect Size Calculation for Pre-Post Designs with Correlation Imputation	2009-03-18
automap Automatic Interpolation Package	2009-03-19
rbenchmark Benchmarking Routine for R	2009-03-20
LambertW Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data	2009-03-23
lcda Latent Class Discriminant Analysis	2009-03-25
WriteXLS Cross-Platform Perl Based R Function to Create Excel 2003 (XLS) and Excel 2007 (XLSX) Files	2009-03-26
isotone Active Set and Generalized PAVA for Isotone Optimization	2009-03-26
arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise Rules	2009-03-27
bethel Bethel's algorithm	2009-03-27
primer Functions and Data for the Book, a Primer of Ecology with R	2009-03-27
ModelMap Modeling and Map Production using Random Forest and Related Stochastic Models	2009-03-28
tmvtnorm Truncated Multivariate Normal and Student t Distribution	2009-03-29

Archived / removed

Why

28 reason not recorded
1 Archived: it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders

polydect	2009-03-28
fuzzyOP	2009-03-14
FracSim	2009-03-10
mclust02	2009-03-08
ProbeR	2009-03-01
SparseLogReg	2009-03-01
classPP	2009-03-01
mota	2009-03-01
distributions	2009-02-25
sigma2tools	2009-02-25
staRt	2009-02-25
EMV	2009-02-23
HTMLapplets	2009-02-23
LLN	2009-02-23
Rmdr	2009-02-23
femmeR	2009-02-23
knnFinder	2009-02-23
knnflex	2009-02-23
mlica	2009-02-23
pARtial	2009-02-23
rggm	2009-02-23
tdist	2009-02-23
bicreduc	2009-02-19
rrp Archived: it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders	2009-02-19
hints	2009-02-04
netmodels	2009-02-04
qgen	2009-02-04
GFMaps	2009-02-03
hdf5	2009-01-11

Notable

Major version jumps

LearnBayes 1.2→2.0 ensembleBMA 3.0-5→4.0-2 meboot 0.0.1→1.0-0 caret 3.51→4.05 RSEIS 1.1-3→2.1-0 hwriter 0.93→1.0 MCPMod 0.2-2→1.0-1 PK 0.04→1.00 mefa 2.1-3→3.0-0 XML 1.99-0→2.1-0 exams 0.9-5→1.0-0 gRbase 0.9.0→1.0.0 compositions 0.91-6→1.01-1 surveillance 0.9-9→1.0-2 IDPmisc 0.9.9→1.0.01 TSP 0.2-6→1.0-0 arules 0.6-8→1.0-0 seriation 0.1-6→1.0-0

First-time CRAN authors

Natalia Becker ×2 Wiebke Werft ×2 Gary A. Nelson Jiajia Chen Alessia Di Blasi Kamila Facevicova Karel Hron Petra Kynclova ×2 Alessandra Menafoglio ×3 Angelika Meraner Dominika Miksova Federico Pavone Veronika Pintar Nikola Stefelova Jan Walach Roman Wiederkehr Gianluca Zeni I. B. Allaman ×3 Kamil Barton ×2 Matthew Dowle