onemap
Construction of Genetic Maps in Experimental Crosses
Description
Analysis of molecular marker data from model and non-model systems. For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu and colleagues (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multi-point approaches using hidden Markov models.
Downloads
767
Last 30 days
4300th
2.5K
Last 90 days
10.8K
Last year
Trend: +0.8% (30d vs prior 30d)
25
Last 30 days
118
Last 90 days
425
Last year
Trend: -37.5% (30d vs prior 30d)
0
Last 7 days
9
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Packages required but not available: 'plotly', 'smacof', 'ggpubr' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
package dependencies
Package required but not available: ‘smacof’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 3.8Mb
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/onemap.Rcheck/00install.out' for details.
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 3.8Mb
NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 3.8Mb
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
22,599
Files
238
Compiled share
13.7%
Has compiled src
Yes
Language breakdown
API
Exported functions
74
Internal functions
66
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
95.9%
\dontrun example ratio
61.9%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
83.3%
Unsafe pattern score
0
Dep constraint coverage
26.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2008-06-06
Latest release
2026-01-13
Avg cadence
242 days
Cold removal rate
100%
Dep drift
33
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.