R Observatory: Metrics for mhsmm version 0.4.21

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mhsmm

0.4.21Package record

Inference for Hidden Markov and Semi-Markov Models

1packages depend

7.6Kdownloads / year

–test coverage

9/13flavors OK

Overview

About

Maintained by Jared O'ConnellCRAN page ↗

Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences. Suitable for equidistant time series data, with multivariate and/or missing data. Allows user defined emission distributions.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mhsmm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mhsmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mhsmm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mhsmm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

4NOTE9OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Jared O'Connell <jaredoconnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jared",
                      family = "O'Connell",
                      role = c("aut", "cre"),
                      email = "jaredoconnell@gmail.com"),
               person(given = "Søren",
                      family = "Højsgaard",
                      role = "aut",
                      email = "sorenh@math.aau.dk"))
as necessary.

NOTEcompiled coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

File ‘mhsmm/libs/mhsmm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

CRAN check page ↗

Slowest check: 2.8 min · r-devel-windows-x86_64

Status changes

NOTE9 OK, 4 NOTENow
NOTE10 OK, 4 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.21

READMEYes · 58 wordsVignettesYes · 2 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 33
Examples that run: 85%17 run in a plain check · 3 hold no code
Exported functions with examples: 63%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 45%

Vignettes (2)

How these are measured

Downloads

7.6K

CRAN downloads in the past year

Rank #5,367 · ~21/day · ~630/mo

Releases R versions

Daily download trend is not available in this view yet.

56730 days

1.5K90 days

7.6K1 year

Compare downloads with other packages →

Also on384 r2u5 autocran3.8K conda_forge115 c2d4u

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing mhsmm adds 1 package (1 with compiled code, 1.0 MB of source tarballs). Heaviest: mvtnorm 1.0 MB.

Depends (1)

mvtnorm

Imports (1)

methods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Depends 1

Depends, Imports or LinkingTo, most downloaded first

acc

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Jared O'Connell

Søren Højsgaard

· added in 0.4.16

Maintainer since 0.2.1 (2009), previously Soren Hojsgaard (0.1.0)

Listed in earlier versions (2)

Jared O'Connell with minor contributions from Soren Hojsgaard

no longer listed · 0.1.0

Soren Hojsgaard

no longer listed · 0.2.1 to 0.3.5

Releases (20)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.4.21Latest
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2023-08-23 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.4.16
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2017-01-15 · diff ↗
0.4.14
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2016-12-05 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 26 earlier eventsHide 26 earlier events

0.4.12
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2014-01-09 · diff ↗
0.4.11
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2013-06-24 · diff ↗
0.4.10
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2013-06-13 · diff ↗
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R 3.0.0 released · 2013-04-03
0.4.8
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2013-01-26 · diff ↗
0.4.6
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2012-09-03 · diff ↗ ·
added 1 export
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R 2.15.0 released · 2012-03-30
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R 2.14.0 released · 2011-10-31
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2011-06-17 · diff ↗
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R 2.13.0 released · 2011-04-13
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2010-11-29 · diff ↗
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R 2.12.0 released · 2010-10-15
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2010-05-19 · diff ↗
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R 2.11.0 released · 2010-04-22
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R 2.10.0 released · 2009-10-26
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2009-09-24 · diff ↗
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2009-08-31 · diff ↗
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R 2.9.0 released · 2009-04-17
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2009-04-04 · diff ↗
0.1.0
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2009-03-02
R
R 2.8.0 released · 2008-10-20

Package metadata

First published: 2009-03-02
Total releases: 20 / 17 yrs
License: GPL (>= 2) OSI
Bundled data: 123 KB / 3 files
Download size: 391 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("mhsmm")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v039.i04.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mhsmm version 0.4.21 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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