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velociraptor

Bioc current

Toolkit for Single-Cell Velocity

v1.22.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.

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Topics

Software › Technology › SingleCell
Software › AssayDomain › GeneExpression
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage

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Bioconductor (1)

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