R Observatory: Metrics for basilisk version 1.24.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

basilisk

Bioc current

Freezing Python Dependencies Inside Bioconductor Packages

v1.24.0 · software · GPL-3

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.11 · Apr 28, 2020

Current · Requires R 4.6

1.0 In 13 of 49 releases 3.23

Description

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

42 31 exported

Complexity

2.1 avg / 10 max

Call network

42 nodes / 48 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

2,877

Files

66

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,227 (42.6%)Tests 455 (15.8%)Docs 893 (31%)Vignettes 302 (10.5%)

API

Exported functions

32

Internal functions

11

Recent export changes

v3.22+14 clearExternalDir, defaultPythonVersion, destroyOldVersions +11 more −4 findPersistentEnv, getBasiliskForceFallback, listCorePackages 1 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.37

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

–

System requirements

–

C++ standard

–

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

13

First release

2020-05-11

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

5

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMEYes · 189 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 94%
Documented parameters: 100%
Return-value docs: 94%
References docs: 0%

Topics

Software › Infrastructure

Depended on by (38)

CRAN (1)

SUMO

People

Aaron Lun author maintainer cph
Vince Carey contributor

At a glance

Version: 1.24.0
Category: software
License: GPL-3
Requires R: ≥ 4.6
Maintainer: Aaron Lun
Entered: 3.11 · Apr 28, 2020
Current: 3.23 · Apr 29, 2026

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

reticulate

Imports

utilsmethodsparalleldir.expiryBioc

Suggests

knitr rmarkdownBiocStyleBioctestthat callr

Source & history

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("basilisk")

Format

Lun, A., & Carey, V. (2026). basilisk: Freezing Python Dependencies Inside Bioconductor Packages (Version 1.24.0) [Computer software]. https://bioconductor.org/packages/basilisk

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for basilisk version 1.24.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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