Release Lineage
Entered 3.13 · May 20, 2021
Removed after 3.23 · Apr 29, 2026
Description
Describes how to use the csaw package to detect differentially bound regions in ChIP-seq data. This provides instructions on how to read in BAM files to obtain a per-window count matrix, filtering to obtain high-abundance windows of interest, normalization of sample-specific biases, testing for differential binding, consolidation of per-window results to obtain per-region statistics, and annotation and visualization of the DB results.
None published for Bioconductor
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- Aaron Lun author maintainer
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