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gDRimport

Bioc current

Package for handling the import of dose-response data

v1.10.0 · software · Artistic-2.0

Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

77 23 exported

Complexity

3.9 avg / 24 max

Call network

77 nodes / 99 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

7,048

Files

226

Compiled share

0%

Has compiled src

No

Language breakdown

R 3,827 (54.3%)Tests 1,112 (15.8%)Docs 1,740 (24.7%)Vignettes 369 (5.2%)

API

Exported functions

26

Internal functions

41

Recent export changes

v3.20+2 convert_LEVEL5_prism_to_gDR_input, convert_LEVEL6_prism_to_gDR_input
v3.19+1 get_test_tsv_data

Testing & CI

Has tests

Yes

Test-to-code ratio

0.29

testthat edition

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

4.2%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.2

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

6

First release

2023-10-24

Latest release

2026-04-28

Avg cadence

189 days

Cold removal rate

Dep drift

1

LOC over versions

v3.18: 5,577 LOCv3.19: 5,781 LOCv3.20: 6,155 LOCv3.21: 6,282 LOCv3.22: 6,299 LOCv3.23: 7,048 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 19 wordsVignettesYes · dynamicpkgdown siteYesNEWSYes · 100% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

Depended on by (2)

Bioconductor (2)

People

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