gDRutils

Bioc current

A package with helper functions for processing drug response data

v1.10.0 · software · Artistic-2.0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

203 133 exported

Complexity

2.6 avg / 21 max

Call network

203 nodes / 254 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

15,787

Files

203

Compiled share

Has compiled src

Language breakdown

R 7,295 (46.2%)Tests 4,021 (25.5%)Docs 4,244 (26.9%)Vignettes 227 (1.4%)

API

Exported functions

133

Internal functions

Recent export changes

v3.23+1 update_drug_name

v3.22+3 merge_MAE, predict_smooth_from_combo, process_batch

Testing & CI

Has tests

Yes

Test-to-code ratio

0.55

testthat edition

–

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

97%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

Dep constraint coverage

Secret pattern count

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.2

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

First release

2023-10-24

Latest release

2026-04-28

Avg cadence

189 days

Cold removal rate

100%

Dep drift

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMEYes · 59 wordsVignettesYes · dynamicpkgdown siteYesNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 98%
Return-value docs: 99%
References docs: 0%

Topics

Software

Software › Infrastructure

Depended on by (3)

Bioconductor (3)

gDR gDRcore gDRimport

People

Arkadiusz Gladki maintainer author
Aleksander Chlebowski author
Bartosz Czech author
Marc Hafner author
Sergiu Mocanu author
Pawel Piatkowski author
Dariusz Scigocki author
Janina Smola author
Allison Vuong author

Report a problem with this page →