R Observatory: Metrics for gDRutils version 1.10.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gDRutils

Bioc current

A package with helper functions for processing drug response data

v1.10.0 · Package record · software · Artistic-2.0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

203 133 exported

Complexity

2.6 avg / 21 max

Call network

203 nodes / 254 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

How coverage is measured·How the call graph is built

Code

Structure

Lines of code

15,785

Files

194

Compiled share

0%

Has compiled src

No

Language breakdown

R 7,295 (46.2%)Tests 4,021 (25.5%)Docs 4,244 (26.9%)Vignettes 225 (1.4%)

API

Exported functions

133

Internal functions

70

Recent export changes

v3.23+1 update_drug_name

v3.22+3 merge_MAE, predict_smooth_from_combo, process_batch

Testing

Has tests

Yes

Test-to-code ratio

0.55

testthat edition

–

Docs

Roxygen coverage

97%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.2

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

6

First release

2023-10-24

Latest release

2026-04-28

Avg cadence

189 days

Cold removal rate

100%

Dep drift

6

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release

READMEYes · 59 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structuredCitation fileNoWebsiteYes · pkgdown

Help pages: 125 (9 internal)includes a package overview page
Examples that run: 100%115 run in a plain check
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 99%
Help pages citing references: 0%

Vignettes (1)

gDRutils HTML

How these are measured

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/gdrplatform/gdrutils on 2026-10-11.

Continuous integration (1)

GitHub Actions

Governance and community (2)

PR templateCODEOWNERS

Docs source (2)

pkgdown

GitHub Pages site last deployed 2026-10-09

Reproducibility and dev environment (1)

Dockerfile

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Topics

Software

Software › Infrastructure

Maintainer: Arkadiusz Gladki

Available on

CRANr2uBioconductorautoCRANCOPR

Depended on by (3)

Bioconductor (3)

gDR gDRcore gDRimport

People

Arkadiusz Gladki maintainer author
Aleksander Chlebowski author
Bartosz Czech author
Marc Hafner author
Sergiu Mocanu author
Pawel Piatkowski author
Dariusz Scigocki author
Janina Smola author
Allison Vuong author

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gDRutils")

Format

Gladki, A., Chlebowski, A., Czech, B., Hafner, M., Mocanu, S., Piatkowski, P., Scigocki, D., Smola, J., & Vuong, A. (2026). gDRutils: A package with helper functions for processing drug response data (Version 1.10.0) [Computer software]. https://bioconductor.org/packages/gDRutils

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gDRutils version 1.10.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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