R Observatory: Metrics for gDRcore version 1.10.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gDRcore

Bioc current

Processing functions and interface to process and analyze drug dose-response data

v1.10.0 · Package record · software · Artistic-2.0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

117 41 exported

Complexity

3.1 avg / 16 max

Call network

117 nodes / 150 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

How coverage is measured·How the call graph is built

Code

Structure

Lines of code

10,470

Files

136

Compiled share

3%

Has compiled src

Yes

Language breakdown

R 5,916 (56.5%)C/C++/src 315 (3%)Tests 1,491 (14.2%)Docs 2,391 (22.8%)Vignettes 357 (3.4%)

API

Exported functions

41

Internal functions

61

Recent export changes

v3.23+1 map_untreated

v3.22+4 annotate_mae_with_cell_line, annotate_mae_with_drug, annotate_se_with_cell_line +1 more

Testing

Has tests

Yes

Test-to-code ratio

0.25

testthat edition

–

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

6

Dep constraint coverage

9.1%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.2

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

6

First release

2024-02-15

Latest release

2026-04-28

Avg cadence

181 days

Cold removal rate

100%

Dep drift

0

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release

READMEYes · 43 wordsVignettesYes · 3 · dynamicNEWSYes · 100% structuredCitation fileNoWebsiteYes · pkgdown

Help pages: 65 (25 internal)includes a package overview page
Examples that run: 100%32 run in a plain check
Exported functions with examples: 97%
Documented parameters: 99%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (3)

gDRcore HTML
gDRcore HTML
gDRcore HTML

How these are measured

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/gdrplatform/gdrcore on 2026-10-21.

Continuous integration (1)

GitHub Actions

Governance and community (2)

PR templateCODEOWNERS

Docs source (2)

pkgdown

GitHub Pages site last deployed 2026-10-18

Reproducibility and dev environment (1)

Dockerfile

How this is detected·Detection ruleset v4 (2026-10-20)

Topics

Software

Software › ShinyApps

Maintainer: Arkadiusz Gladki

Available on

CRANr2uBioconductorautoCRANCOPR

Depended on by (1)

Bioconductor (1)

gDR

People

Arkadiusz Gladki maintainer author
Bartosz Czech author
Marc Hafner author
Marcin Kamianowski author
Sergiu Mocanu author
Pawel Piatkowski author
Natalia Potocka author
Dariusz Scigocki author
Janina Smola author
Allison Vuong author

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gDRcore")

Format

Gladki, A., Czech, B., Hafner, M., Kamianowski, M., Mocanu, S., Piatkowski, P., Potocka, N., Scigocki, D., Smola, J., & Vuong, A. (2026). gDRcore: Processing functions and interface to process and analyze drug dose-response data (Version 1.10.0) [Computer software]. https://bioconductor.org/packages/gDRcore

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gDRcore version 1.10.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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