anndataR
Bioc currentAnnData interoperability in R
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
Bring the power and flexibility of AnnData to the R ecosystem, allowing you to effortlessly manipulate and analyse your single-cell data. This package lets you work with backed h5ad and zarr files, directly access various slots (e.g. X, obs, var), or convert the data into SingleCellExperiment and Seurat objects.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
197 8 exported
Complexity
3 avg / 21 max
Call network
197 nodes / 188 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
21,848
Files
167
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
186
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.61
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
22.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2026-03-02
Latest release
2026-04-28
Avg cadence
57 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 87%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (6)
Bioconductor (5)
CRAN (1)
People
- Robrecht Cannoodt author maintainer
- Chan Zuckerberg Initiative fnd
- Data Intuitive fnd
- scverse consortium spn
- Danila Bredikhin contributor
- Louise Deconinck author
- Hugo Gruson contributor
- Artür Manukyan contributor
- Martin Morgan author
- Chananchida Sang-aram contributor
- Brian Schilder contributor
- Isaac Virshup contributor
- Luke Zappia author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("anndataR")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.