MACSr
Bioc currentMACS: Model-based Analysis for ChIP-Seq
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
15 14 exported
Complexity
3.7 avg / 5 max
Call network
15 nodes / 13 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,094
Files
71
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
1
Testing
Has tests
Yes
Test-to-code ratio
0.24
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
33.3%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
BSD_3_clause + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-05-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 16includes a package overview page
- Examples that run
- 85%11 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 1 never run
- Exported functions with examples
- 93%
- Documented parameters
- 98%
- Return-value docs
- 93%
- Help pages citing references
- 0%
- MACSr HTML
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
3 practices detected in the Bioconductor git repository
Topics
People
- Qiang Hu author maintainer
- Philippa Doherty author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MACSr")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.