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SpatialFeatureExperiment

Bioc current

Integrating SpatialExperiment with Simple Features in sf

v1.14.0 · software · Artistic-2.0
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Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

A new S4 class integrating Simple Features with the R package sf to bring geospatial data analysis methods based on vector data to spatial transcriptomics. Also implements management of spatial neighborhood graphs and geometric operations. This pakage builds upon SpatialExperiment and SingleCellExperiment, hence methods for these parent classes can still be used.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure › DataRepresentation
Software › ResearchField › Transcriptomics
Software › Technology › Spatial

Depended on by (10)

Bioconductor (10)

alabaster.sfe concordexR imageFeatureTCGA imageTCGAutils jazzPanda Voyager xenLite SFEData TENxXeniumData OSTA

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