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alabaster.sfe

Bioc current

Language agnostic on disk serialization of SpatialFeatureExperiment

v1.4.0 · software · MIT + file LICENSE

Release Lineage

Entered 3.21 · Apr 16, 2025

Current · Requires R 4.6

1.0 In 3 of 49 releases 3.23

Description

Builds upon the existing ArtifactDB project, expending alabaster.spatial for language agnostic on disk serialization of SpatialFeatureExperiment.

Code

Structure

Lines of code

1,486

Files

36

Compiled share

0%

Has compiled src

No

Language breakdown

R 754 (50.7%)Tests 159 (10.7%)Docs 428 (28.8%)Vignettes 145 (9.8%)

API

Exported functions

5

Internal functions

20

Recent export changes

v3.21+5 readBioFormatsImage, readExtImage, readSF +2 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.21

testthat edition

3

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

Yes

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

12.5%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

3

First release

2025-04-15

Latest release

2026-04-28

Avg cadence

189 days

Cold removal rate

Dep drift

0

LOC over versions

v3.21: 1,486 LOCv3.22: 1,486 LOCv3.23: 1,486 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

People