RBioFormats
Bioc currentR interface to Bio-Formats
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
40 15 exported
Complexity
2 avg / 14 max
Call network
40 nodes / 39 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,097
Files
52
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
25
Testing & CI
Has tests
Yes
Test-to-code ratio
0.28
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
20%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
1
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 93%
- References docs
- 7%
Topics
Depended on by (7)
Bioconductor (7)
People
- Andrzej Oleś author maintainer
- John Lee contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("RBioFormats")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.