SpatialOmicsOverlay
Bioc currentSpatial Overlay for Omic Data from Nanostring GeoMx Data
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
Tools for NanoString Technologies GeoMx Technology. Package to easily graph on top of an OME-TIFF image. Plotting annotations can range from tissue segment to gene expression.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
40 24 exported
Complexity
5.6 avg / 16 max
Call network
40 nodes / 45 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,005
Files
94
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
45
Internal functions
16
Testing & CI
Has tests
Yes
Test-to-code ratio
0.41
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
MIT
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-04-25
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Maddy Griswold maintainer author
- Megan Vandenberg contributor
- Stephanie Zimmerman contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("SpatialOmicsOverlay")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.