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ToPASeq

Bioc removed

Topology-based pathway analysis of RNA-seq data

v1.26.0 · AGPL-3

Release Lineage

Entered 3.0 · Oct 14, 2014

Removed after 3.13 · May 20, 2021

1.0 In 14 of 49 releases 3.23

Description

Implementation of methods for topology-based pathway analysis of RNA-seq data. This includes Topological Analysis of Pathway Phenotype Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 2012).

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