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XBSeq

Bioc removed

Test for differential expression for RNA-seq data

v1.24.0 · GPL (>=3)

Release Lineage

Entered 3.2 · Oct 14, 2015

Removed after 3.13 · May 20, 2021

1.0 In 12 of 49 releases 3.23

Description

We developed a novel algorithm, XBSeq, where a statistical model was established based on the assumption that observed signals are the convolution of true expression signals and sequencing noises. The mapped reads in non-exonic regions are considered as sequencing noises, which follows a Poisson distribution. Given measureable observed and noise signals from RNA-seq data, true expression signals, assuming governed by the negative binomial distribution, can be delineated and thus the accurate detection of differential expressed genes.

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